Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Gm9947-201ENSMUST00000067599 2920 ntBASIC13.05□□□□□ -0.32
Msh4Q99MT2 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Gm12091-201ENSMUST00000146791 830 ntBASIC13.05□□□□□ -0.32
Msh4Q99MT2 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Gm3809-201ENSMUST00000180973 1006 ntBASIC13.05□□□□□ -0.32
Msh4Q99MT2 Gm5745-201ENSMUST00000183748 313 ntBASIC13.05□□□□□ -0.32
Msh4Q99MT2 Mir6392-201ENSMUST00000184924 108 ntBASIC13.05□□□□□ -0.32
Msh4Q99MT2 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Msh4Q99MT2 AC155286.1-201ENSMUST00000218632 448 ntBASIC13.05□□□□□ -0.32
Msh4Q99MT2 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Msh4Q99MT2 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Lmo7-201ENSMUST00000100337 6092 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Msh4Q99MT2 AC121805.2-201ENSMUST00000218808 2538 ntBASIC13.05□□□□□ -0.32
Msh4Q99MT2 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Msh4Q99MT2 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Prkca-201ENSMUST00000059595 8409 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Msh4Q99MT2 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Msh4Q99MT2 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC13.04□□□□□ -0.32
Msh4Q99MT2 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Msh4Q99MT2 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Msh4Q99MT2 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Msh4Q99MT2 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Gm12490-201ENSMUST00000120255 560 ntBASIC13.04□□□□□ -0.32
Msh4Q99MT2 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Gm24420-201ENSMUST00000176676 59 ntBASIC13.04□□□□□ -0.32
Msh4Q99MT2 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Gm7653-201ENSMUST00000214567 508 ntBASIC13.04□□□□□ -0.32
Msh4Q99MT2 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Rims1-205ENSMUST00000097811 6446 ntAPPRIS P5 TSL 5 BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Msh4Q99MT2 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Msh4Q99MT2 Gm9924-202ENSMUST00000192760 2311 ntBASIC13.04□□□□□ -0.32
Msh4Q99MT2 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Gm38037-201ENSMUST00000192600 1624 ntBASIC13.03□□□□□ -0.32
Msh4Q99MT2 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Gm45003-201ENSMUST00000205875 2158 ntBASIC13.03□□□□□ -0.32
Msh4Q99MT2 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms