Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ccdc9Q8VC31 Ppp1r18-202ENSMUST00000122899 2743 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ccdc9Q8VC31 Mroh1-204ENSMUST00000159218 5085 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Ccdc9Q8VC31 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ccdc9Q8VC31 Ptgdr-201ENSMUST00000095959 3187 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ccdc9Q8VC31 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Ccdc9Q8VC31 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Ccdc9Q8VC31 Gm18489-201ENSMUST00000172565 551 ntBASIC16.07■□□□□ 0.16
Ccdc9Q8VC31 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ccdc9Q8VC31 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Ccdc9Q8VC31 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC16.07■□□□□ 0.16
Ccdc9Q8VC31 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC16.07■□□□□ 0.16
Ccdc9Q8VC31 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
Ccdc9Q8VC31 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Ccdc9Q8VC31 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Ccdc9Q8VC31 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ccdc9Q8VC31 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ccdc9Q8VC31 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ccdc9Q8VC31 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Ccdc9Q8VC31 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ccdc9Q8VC31 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ccdc9Q8VC31 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ccdc9Q8VC31 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ccdc9Q8VC31 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ccdc9Q8VC31 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Ccdc9Q8VC31 Ltbp2-202ENSMUST00000110254 6602 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ccdc9Q8VC31 Jmjd1c-211ENSMUST00000174408 8377 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Ccdc9Q8VC31 Jmjd1c-201ENSMUST00000051446 8382 ntAPPRIS P4 TSL 5 BASIC16.07■□□□□ 0.16
Ccdc9Q8VC31 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ccdc9Q8VC31 Mirg-208ENSMUST00000182499 3187 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Ccdc9Q8VC31 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ccdc9Q8VC31 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC16.06■□□□□ 0.16
Ccdc9Q8VC31 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
Ccdc9Q8VC31 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC16.06■□□□□ 0.16
Ccdc9Q8VC31 Gm18195-201ENSMUST00000207604 706 ntBASIC16.06■□□□□ 0.16
Ccdc9Q8VC31 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Ccdc9Q8VC31 AC161829.1-201ENSMUST00000220298 281 ntBASIC16.06■□□□□ 0.16
Ccdc9Q8VC31 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Ccdc9Q8VC31 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ccdc9Q8VC31 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
Ccdc9Q8VC31 Map4-205ENSMUST00000165876 5573 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Ccdc9Q8VC31 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Ccdc9Q8VC31 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
Ccdc9Q8VC31 Fam206a-201ENSMUST00000045368 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ccdc9Q8VC31 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC16.06■□□□□ 0.16
Ccdc9Q8VC31 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ccdc9Q8VC31 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Ccdc9Q8VC31 Grm5-202ENSMUST00000125009 8047 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
Ccdc9Q8VC31 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Lipe-201ENSMUST00000003207 3613 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Gm35040-201ENSMUST00000206829 5094 ntTSL 2 BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Arhgef3-204ENSMUST00000225949 3198 ntBASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Gm37153-201ENSMUST00000193637 231 ntBASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Gm5864-201ENSMUST00000202263 970 ntBASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Lamb3-209ENSMUST00000194677 4867 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Taf9b-201ENSMUST00000055497 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Setdb1-202ENSMUST00000107170 4622 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Lax1-201ENSMUST00000169295 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 2410002F23Rik-204ENSMUST00000107948 2908 ntAPPRIS P2 TSL 2 BASIC16.05■□□□□ 0.16
Ccdc9Q8VC31 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 Nek4-201ENSMUST00000050171 2793 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 Zfp772-201ENSMUST00000074455 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 Meaf6-205ENSMUST00000154689 4550 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 Gm43868-201ENSMUST00000205187 2114 ntBASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 AC159195.1-201ENSMUST00000225867 2086 ntBASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 Olfr482-202ENSMUST00000217304 2612 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 Galnt11-202ENSMUST00000114950 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 Gm37391-201ENSMUST00000194891 2318 ntBASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 Gm13884-201ENSMUST00000118103 829 ntBASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 Gm10060-201ENSMUST00000212002 111 ntBASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 AC164629.2-201ENSMUST00000217916 270 ntBASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 AC132467.2-202ENSMUST00000227726 559 ntBASIC16.04■□□□□ 0.16
Ccdc9Q8VC31 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms