Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Brf1Q8CFK2 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Brf1Q8CFK2 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Brf1Q8CFK2 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Brf1Q8CFK2 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC16.15■□□□□ 0.18
Brf1Q8CFK2 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Brf1Q8CFK2 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Brf1Q8CFK2 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Brf1Q8CFK2 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Brf1Q8CFK2 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC16.15■□□□□ 0.18
Brf1Q8CFK2 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Brf1Q8CFK2 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Brf1Q8CFK2 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC16.15■□□□□ 0.18
Brf1Q8CFK2 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Brf1Q8CFK2 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Brf1Q8CFK2 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
Brf1Q8CFK2 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Brf1Q8CFK2 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Brf1Q8CFK2 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Brf1Q8CFK2 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Brf1Q8CFK2 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Brf1Q8CFK2 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Brf1Q8CFK2 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Brf1Q8CFK2 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Brf1Q8CFK2 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
Brf1Q8CFK2 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Brf1Q8CFK2 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
Brf1Q8CFK2 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
Brf1Q8CFK2 Gm9755-201ENSMUST00000032981 1356 ntBASIC16.14■□□□□ 0.17
Brf1Q8CFK2 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Brf1Q8CFK2 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC16.14■□□□□ 0.17
Brf1Q8CFK2 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Brf1Q8CFK2 Gm42928-201ENSMUST00000197338 3339 ntBASIC16.14■□□□□ 0.17
Brf1Q8CFK2 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Brf1Q8CFK2 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Brf1Q8CFK2 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Brf1Q8CFK2 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Brf1Q8CFK2 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Brf1Q8CFK2 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Brf1Q8CFK2 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Brf1Q8CFK2 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC16.14■□□□□ 0.17
Brf1Q8CFK2 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Brf1Q8CFK2 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
Brf1Q8CFK2 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC16.14■□□□□ 0.17
Brf1Q8CFK2 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC16.14■□□□□ 0.17
Brf1Q8CFK2 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Brf1Q8CFK2 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Brf1Q8CFK2 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC16.14■□□□□ 0.17
Brf1Q8CFK2 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Brf1Q8CFK2 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Brf1Q8CFK2 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Brf1Q8CFK2 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Brf1Q8CFK2 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Brf1Q8CFK2 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Brf1Q8CFK2 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Brf1Q8CFK2 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Brf1Q8CFK2 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Brf1Q8CFK2 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Brf1Q8CFK2 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Brf1Q8CFK2 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Brf1Q8CFK2 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Brf1Q8CFK2 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Brf1Q8CFK2 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Brf1Q8CFK2 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC16.13■□□□□ 0.17
Brf1Q8CFK2 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
Brf1Q8CFK2 Gm5912-201ENSMUST00000122282 1438 ntBASIC16.13■□□□□ 0.17
Brf1Q8CFK2 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Brf1Q8CFK2 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Brf1Q8CFK2 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Brf1Q8CFK2 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Brf1Q8CFK2 Gm11918-201ENSMUST00000121660 179 ntBASIC16.13■□□□□ 0.17
Brf1Q8CFK2 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC16.13■□□□□ 0.17
Brf1Q8CFK2 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Brf1Q8CFK2 Gm9794-201ENSMUST00000202370 423 ntBASIC16.13■□□□□ 0.17
Brf1Q8CFK2 Gm45059-201ENSMUST00000205558 1077 ntBASIC16.13■□□□□ 0.17
Brf1Q8CFK2 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC16.13■□□□□ 0.17
Brf1Q8CFK2 AC150560.1-201ENSMUST00000227731 1187 ntBASIC16.13■□□□□ 0.17
Brf1Q8CFK2 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Brf1Q8CFK2 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Brf1Q8CFK2 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Brf1Q8CFK2 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC16.13■□□□□ 0.17
Brf1Q8CFK2 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Brf1Q8CFK2 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Brf1Q8CFK2 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Brf1Q8CFK2 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Brf1Q8CFK2 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Brf1Q8CFK2 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Brf1Q8CFK2 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Brf1Q8CFK2 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Brf1Q8CFK2 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Brf1Q8CFK2 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Brf1Q8CFK2 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Brf1Q8CFK2 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Brf1Q8CFK2 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Brf1Q8CFK2 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC16.12■□□□□ 0.17
Brf1Q8CFK2 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Brf1Q8CFK2 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC16.12■□□□□ 0.17
Brf1Q8CFK2 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Brf1Q8CFK2 Gm12928-201ENSMUST00000117115 573 ntBASIC16.12■□□□□ 0.17
Brf1Q8CFK2 Gm8463-201ENSMUST00000208573 613 ntBASIC16.12■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 42.2 ms