Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm32025-201ENSMUST00000217960 307 ntBASIC18.25■□□□□ 0.51
Usp40Q8BWR4 CT009713.10-202ENSMUST00000225734 696 ntBASIC18.25■□□□□ 0.51
Usp40Q8BWR4 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Usp40Q8BWR4 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Usp40Q8BWR4 Gm10729-202ENSMUST00000193403 1375 ntBASIC18.25■□□□□ 0.51
Usp40Q8BWR4 AC101945.2-201ENSMUST00000227886 1377 ntBASIC18.25■□□□□ 0.51
Usp40Q8BWR4 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
Usp40Q8BWR4 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Usp40Q8BWR4 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Usp40Q8BWR4 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Usp40Q8BWR4 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Usp40Q8BWR4 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Usp40Q8BWR4 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Usp40Q8BWR4 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Usp40Q8BWR4 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC18.24■□□□□ 0.51
Usp40Q8BWR4 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Usp40Q8BWR4 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Usp40Q8BWR4 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC18.24■□□□□ 0.51
Usp40Q8BWR4 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Usp40Q8BWR4 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Usp40Q8BWR4 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Usp40Q8BWR4 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Usp40Q8BWR4 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Usp40Q8BWR4 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Usp40Q8BWR4 Gm15370-201ENSMUST00000117158 253 ntBASIC18.24■□□□□ 0.51
Usp40Q8BWR4 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Usp40Q8BWR4 Gm17208-201ENSMUST00000168388 535 ntBASIC18.24■□□□□ 0.51
Usp40Q8BWR4 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC18.24■□□□□ 0.51
Usp40Q8BWR4 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Usp40Q8BWR4 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Usp40Q8BWR4 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Usp40Q8BWR4 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Usp40Q8BWR4 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Usp40Q8BWR4 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Usp40Q8BWR4 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Usp40Q8BWR4 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Usp40Q8BWR4 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Usp40Q8BWR4 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Usp40Q8BWR4 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC18.24■□□□□ 0.51
Usp40Q8BWR4 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Usp40Q8BWR4 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Usp40Q8BWR4 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Usp40Q8BWR4 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
Usp40Q8BWR4 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
Usp40Q8BWR4 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Usp40Q8BWR4 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Usp40Q8BWR4 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
Usp40Q8BWR4 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC18.23■□□□□ 0.51
Usp40Q8BWR4 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Usp40Q8BWR4 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
Usp40Q8BWR4 Gm13297-201ENSMUST00000120205 934 ntBASIC18.23■□□□□ 0.51
Usp40Q8BWR4 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC18.23■□□□□ 0.51
Usp40Q8BWR4 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC18.23■□□□□ 0.51
Usp40Q8BWR4 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC18.23■□□□□ 0.51
Usp40Q8BWR4 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Usp40Q8BWR4 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Usp40Q8BWR4 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Usp40Q8BWR4 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Usp40Q8BWR4 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Usp40Q8BWR4 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Usp40Q8BWR4 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Usp40Q8BWR4 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Usp40Q8BWR4 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Usp40Q8BWR4 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Usp40Q8BWR4 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Usp40Q8BWR4 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Usp40Q8BWR4 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Usp40Q8BWR4 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Gm14752-201ENSMUST00000120719 2075 ntBASIC18.22■□□□□ 0.51
Usp40Q8BWR4 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Adgrb2-206ENSMUST00000106018 4470 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Gm44364-201ENSMUST00000198368 141 ntBASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Gm18584-201ENSMUST00000203098 964 ntBASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Gm7046-201ENSMUST00000221351 977 ntBASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC18.22■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 36.1 ms