Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
Trim56Q80VI1 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Trim56Q80VI1 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Trim56Q80VI1 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Trim56Q80VI1 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC15.76■□□□□ 0.11
Trim56Q80VI1 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Trim56Q80VI1 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Trim56Q80VI1 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Trim56Q80VI1 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
Trim56Q80VI1 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC15.76■□□□□ 0.11
Trim56Q80VI1 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Trim56Q80VI1 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC15.76■□□□□ 0.11
Trim56Q80VI1 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Trim56Q80VI1 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Trim56Q80VI1 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Trim56Q80VI1 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC15.76■□□□□ 0.11
Trim56Q80VI1 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Trim56Q80VI1 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Trim56Q80VI1 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
Trim56Q80VI1 Gm12203-201ENSMUST00000118235 598 ntBASIC15.76■□□□□ 0.11
Trim56Q80VI1 Gm12209-201ENSMUST00000120089 596 ntBASIC15.76■□□□□ 0.11
Trim56Q80VI1 Gm22331-201ENSMUST00000158066 136 ntBASIC15.76■□□□□ 0.11
Trim56Q80VI1 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC15.76■□□□□ 0.11
Trim56Q80VI1 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC15.76■□□□□ 0.11
Trim56Q80VI1 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC15.76■□□□□ 0.11
Trim56Q80VI1 Gm43433-201ENSMUST00000196573 481 ntBASIC15.76■□□□□ 0.11
Trim56Q80VI1 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC15.76■□□□□ 0.11
Trim56Q80VI1 Gm44069-201ENSMUST00000204898 506 ntBASIC15.76■□□□□ 0.11
Trim56Q80VI1 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC15.76■□□□□ 0.11
Trim56Q80VI1 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC15.76■□□□□ 0.11
Trim56Q80VI1 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC15.76■□□□□ 0.11
Trim56Q80VI1 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Trim56Q80VI1 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Trim56Q80VI1 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
Trim56Q80VI1 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
Trim56Q80VI1 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Trim56Q80VI1 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Trim56Q80VI1 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Trim56Q80VI1 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Trim56Q80VI1 AC139054.1-201ENSMUST00000226898 1598 ntBASIC15.75■□□□□ 0.11
Trim56Q80VI1 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC15.75■□□□□ 0.11
Trim56Q80VI1 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Trim56Q80VI1 AC114008.2-201ENSMUST00000227699 1347 ntBASIC15.75■□□□□ 0.11
Trim56Q80VI1 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Trim56Q80VI1 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Trim56Q80VI1 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Trim56Q80VI1 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Trim56Q80VI1 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Trim56Q80VI1 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Trim56Q80VI1 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Trim56Q80VI1 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Trim56Q80VI1 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Trim56Q80VI1 Gm6161-201ENSMUST00000121942 1102 ntBASIC15.75■□□□□ 0.11
Trim56Q80VI1 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Trim56Q80VI1 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Trim56Q80VI1 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
Trim56Q80VI1 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Trim56Q80VI1 Gm6254-201ENSMUST00000168178 1072 ntBASIC15.75■□□□□ 0.11
Trim56Q80VI1 Gm6153-201ENSMUST00000172004 1058 ntBASIC15.75■□□□□ 0.11
Trim56Q80VI1 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
Trim56Q80VI1 Gm29127-201ENSMUST00000188304 517 ntBASIC15.75■□□□□ 0.11
Trim56Q80VI1 Gm42442-201ENSMUST00000197951 1133 ntBASIC15.75■□□□□ 0.11
Trim56Q80VI1 Gm5641-202ENSMUST00000198699 1080 ntBASIC15.75■□□□□ 0.11
Trim56Q80VI1 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC15.75■□□□□ 0.11
Trim56Q80VI1 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Trim56Q80VI1 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Trim56Q80VI1 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC15.75■□□□□ 0.11
Trim56Q80VI1 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC15.75■□□□□ 0.11
Trim56Q80VI1 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Trim56Q80VI1 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Trim56Q80VI1 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Trim56Q80VI1 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Trim56Q80VI1 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Trim56Q80VI1 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trim56Q80VI1 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trim56Q80VI1 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trim56Q80VI1 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Trim56Q80VI1 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trim56Q80VI1 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Trim56Q80VI1 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC15.74■□□□□ 0.11
Trim56Q80VI1 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Trim56Q80VI1 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trim56Q80VI1 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC15.74■□□□□ 0.11
Trim56Q80VI1 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Trim56Q80VI1 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC15.74■□□□□ 0.11
Trim56Q80VI1 Gm24644-201ENSMUST00000157114 139 ntBASIC15.74■□□□□ 0.11
Trim56Q80VI1 Gm27331-201ENSMUST00000183705 60 ntBASIC15.74■□□□□ 0.11
Trim56Q80VI1 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC15.74■□□□□ 0.11
Trim56Q80VI1 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC15.74■□□□□ 0.11
Trim56Q80VI1 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC15.74■□□□□ 0.11
Trim56Q80VI1 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Trim56Q80VI1 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trim56Q80VI1 AC173210.1-201ENSMUST00000222341 1131 ntBASIC15.74■□□□□ 0.11
Trim56Q80VI1 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trim56Q80VI1 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC15.74■□□□□ 0.11
Trim56Q80VI1 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Trim56Q80VI1 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trim56Q80VI1 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Trim56Q80VI1 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trim56Q80VI1 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 53.8 ms