Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 AC154725.1-201ENSMUST00000224826 1961 ntBASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Gm11918-201ENSMUST00000121660 179 ntBASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Gm44397-201ENSMUST00000195950 113 ntBASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Gm9794-201ENSMUST00000202370 423 ntBASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Zbtb39-201ENSMUST00000054287 5960 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Upf3bQ3ULL6 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Ighv5-13-201ENSMUST00000193550 290 ntBASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Gm45384-201ENSMUST00000210451 277 ntBASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 AC162801.1-201ENSMUST00000220612 198 ntBASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Gm12462-201ENSMUST00000140826 3056 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Upf3bQ3ULL6 Gm43273-201ENSMUST00000199649 2594 ntBASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms