Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Gm28693-202ENSMUST00000190758 331 ntBASIC14.04□□□□□ -0.16
Upf3aQ3ULJ3 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC14.04□□□□□ -0.16
Upf3aQ3ULJ3 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC14.04□□□□□ -0.16
Upf3aQ3ULJ3 Gm44985-201ENSMUST00000206202 1016 ntBASIC14.04□□□□□ -0.16
Upf3aQ3ULJ3 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Upf3aQ3ULJ3 AC132384.14-201ENSMUST00000219346 1147 ntBASIC14.04□□□□□ -0.16
Upf3aQ3ULJ3 AC093022.1-201ENSMUST00000226949 1072 ntBASIC14.04□□□□□ -0.16
Upf3aQ3ULJ3 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Upf3aQ3ULJ3 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Upf3aQ3ULJ3 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Upf3aQ3ULJ3 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
Upf3aQ3ULJ3 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Upf3aQ3ULJ3 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Upf3aQ3ULJ3 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC14.04□□□□□ -0.16
Upf3aQ3ULJ3 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Upf3aQ3ULJ3 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Upf3aQ3ULJ3 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Upf3aQ3ULJ3 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Upf3aQ3ULJ3 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC14.04□□□□□ -0.16
Upf3aQ3ULJ3 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC14.04□□□□□ -0.16
Upf3aQ3ULJ3 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Upf3aQ3ULJ3 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Upf3aQ3ULJ3 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Upf3aQ3ULJ3 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Upf3aQ3ULJ3 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Upf3aQ3ULJ3 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3aQ3ULJ3 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Upf3aQ3ULJ3 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Upf3aQ3ULJ3 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Upf3aQ3ULJ3 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3aQ3ULJ3 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3aQ3ULJ3 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3aQ3ULJ3 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3aQ3ULJ3 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3aQ3ULJ3 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3aQ3ULJ3 Gm27320-201ENSMUST00000184892 109 ntBASIC14.03□□□□□ -0.16
Upf3aQ3ULJ3 Gm29199-201ENSMUST00000187766 775 ntBASIC14.03□□□□□ -0.16
Upf3aQ3ULJ3 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3aQ3ULJ3 Gm38000-201ENSMUST00000192390 1215 ntBASIC14.03□□□□□ -0.16
Upf3aQ3ULJ3 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Upf3aQ3ULJ3 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC14.03□□□□□ -0.16
Upf3aQ3ULJ3 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC14.03□□□□□ -0.16
Upf3aQ3ULJ3 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3aQ3ULJ3 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
Upf3aQ3ULJ3 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Upf3aQ3ULJ3 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3aQ3ULJ3 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3aQ3ULJ3 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3aQ3ULJ3 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3aQ3ULJ3 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3aQ3ULJ3 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Upf3aQ3ULJ3 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Upf3aQ3ULJ3 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Upf3aQ3ULJ3 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Upf3aQ3ULJ3 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Upf3aQ3ULJ3 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
Upf3aQ3ULJ3 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Upf3aQ3ULJ3 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Upf3aQ3ULJ3 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Upf3aQ3ULJ3 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Upf3aQ3ULJ3 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
Upf3aQ3ULJ3 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Upf3aQ3ULJ3 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC14.02□□□□□ -0.17
Upf3aQ3ULJ3 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC14.02□□□□□ -0.17
Upf3aQ3ULJ3 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Upf3aQ3ULJ3 Gm24548-201ENSMUST00000158650 108 ntBASIC14.02□□□□□ -0.17
Upf3aQ3ULJ3 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC14.02□□□□□ -0.17
Upf3aQ3ULJ3 Mir3102-201ENSMUST00000175555 104 ntBASIC14.02□□□□□ -0.17
Upf3aQ3ULJ3 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Upf3aQ3ULJ3 Gm21769-201ENSMUST00000211922 111 ntBASIC14.02□□□□□ -0.17
Upf3aQ3ULJ3 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Upf3aQ3ULJ3 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Upf3aQ3ULJ3 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Upf3aQ3ULJ3 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Upf3aQ3ULJ3 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Upf3aQ3ULJ3 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Upf3aQ3ULJ3 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Upf3aQ3ULJ3 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Upf3aQ3ULJ3 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Upf3aQ3ULJ3 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Upf3aQ3ULJ3 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Upf3aQ3ULJ3 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Upf3aQ3ULJ3 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Upf3aQ3ULJ3 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Upf3aQ3ULJ3 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Upf3aQ3ULJ3 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Upf3aQ3ULJ3 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Upf3aQ3ULJ3 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Upf3aQ3ULJ3 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Upf3aQ3ULJ3 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Upf3aQ3ULJ3 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Upf3aQ3ULJ3 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC14.01□□□□□ -0.17
Upf3aQ3ULJ3 Gm14381-201ENSMUST00000122105 414 ntBASIC14.01□□□□□ -0.17
Upf3aQ3ULJ3 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC14.01□□□□□ -0.17
Upf3aQ3ULJ3 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC14.01□□□□□ -0.17
Upf3aQ3ULJ3 Gm18584-201ENSMUST00000203098 964 ntBASIC14.01□□□□□ -0.17
Upf3aQ3ULJ3 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Upf3aQ3ULJ3 Gm5781-201ENSMUST00000219792 443 ntBASIC14.01□□□□□ -0.17
Upf3aQ3ULJ3 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Upf3aQ3ULJ3 n-R5s77-201ENSMUST00000083757 119 ntBASIC14.01□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 45.9 ms