Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col6a1Q04857 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col6a1Q04857 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Col6a1Q04857 CT030684.3-201ENSMUST00000227308 2445 ntBASIC14.76□□□□□ -0.05
Col6a1Q04857 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC14.76□□□□□ -0.05
Col6a1Q04857 Gm45630-201ENSMUST00000210243 1911 ntBASIC14.76□□□□□ -0.05
Col6a1Q04857 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col6a1Q04857 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col6a1Q04857 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Col6a1Q04857 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col6a1Q04857 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
Col6a1Q04857 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col6a1Q04857 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Col6a1Q04857 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col6a1Q04857 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col6a1Q04857 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col6a1Q04857 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Col6a1Q04857 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
Col6a1Q04857 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC14.75□□□□□ -0.05
Col6a1Q04857 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col6a1Q04857 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col6a1Q04857 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC14.75□□□□□ -0.05
Col6a1Q04857 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC14.75□□□□□ -0.05
Col6a1Q04857 Gm12714-201ENSMUST00000143391 669 ntTSL 3 BASIC14.75□□□□□ -0.05
Col6a1Q04857 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC14.75□□□□□ -0.05
Col6a1Q04857 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC14.75□□□□□ -0.05
Col6a1Q04857 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC14.75□□□□□ -0.05
Col6a1Q04857 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col6a1Q04857 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC14.75□□□□□ -0.05
Col6a1Q04857 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col6a1Q04857 Gm44985-201ENSMUST00000206202 1016 ntBASIC14.75□□□□□ -0.05
Col6a1Q04857 Gm9445-201ENSMUST00000207454 1285 ntBASIC14.75□□□□□ -0.05
Col6a1Q04857 AC073947.2-201ENSMUST00000215888 1130 ntBASIC14.75□□□□□ -0.05
Col6a1Q04857 AC132384.14-201ENSMUST00000219346 1147 ntBASIC14.75□□□□□ -0.05
Col6a1Q04857 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col6a1Q04857 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col6a1Q04857 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
Col6a1Q04857 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col6a1Q04857 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col6a1Q04857 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col6a1Q04857 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Col6a1Q04857 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC14.75□□□□□ -0.05
Col6a1Q04857 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Col6a1Q04857 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col6a1Q04857 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col6a1Q04857 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col6a1Q04857 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col6a1Q04857 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col6a1Q04857 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col6a1Q04857 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC14.74□□□□□ -0.05
Col6a1Q04857 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col6a1Q04857 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col6a1Q04857 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
Col6a1Q04857 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col6a1Q04857 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Col6a1Q04857 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col6a1Q04857 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col6a1Q04857 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
Col6a1Q04857 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Col6a1Q04857 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Col6a1Q04857 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Col6a1Q04857 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col6a1Q04857 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Col6a1Q04857 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC14.74□□□□□ -0.05
Col6a1Q04857 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col6a1Q04857 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col6a1Q04857 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC14.74□□□□□ -0.05
Col6a1Q04857 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC14.74□□□□□ -0.05
Col6a1Q04857 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col6a1Q04857 Rpl10a-201ENSMUST00000042334 829 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col6a1Q04857 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col6a1Q04857 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col6a1Q04857 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col6a1Q04857 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col6a1Q04857 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Col6a1Q04857 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC14.74□□□□□ -0.05
Col6a1Q04857 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
Col6a1Q04857 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC14.74□□□□□ -0.05
Col6a1Q04857 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col6a1Q04857 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col6a1Q04857 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col6a1Q04857 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col6a1Q04857 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col6a1Q04857 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col6a1Q04857 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Col6a1Q04857 Gm37411-201ENSMUST00000194180 2282 ntBASIC14.73□□□□□ -0.05
Col6a1Q04857 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Col6a1Q04857 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col6a1Q04857 AC153366.2-201ENSMUST00000219461 1984 ntBASIC14.73□□□□□ -0.05
Col6a1Q04857 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col6a1Q04857 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Col6a1Q04857 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col6a1Q04857 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col6a1Q04857 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col6a1Q04857 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col6a1Q04857 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col6a1Q04857 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
Col6a1Q04857 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Col6a1Q04857 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC14.73□□□□□ -0.05
Col6a1Q04857 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms