Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Cux1P53564 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Cux1P53564 Gm8018-201ENSMUST00000173536 789 ntBASIC20.22■□□□□ 0.83
Cux1P53564 Gm44405-201ENSMUST00000198952 126 ntBASIC20.22■□□□□ 0.83
Cux1P53564 Gm5904-201ENSMUST00000210286 865 ntBASIC20.22■□□□□ 0.83
Cux1P53564 Gm18212-201ENSMUST00000211678 889 ntBASIC20.22■□□□□ 0.83
Cux1P53564 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
Cux1P53564 Gm39404-201ENSMUST00000216350 313 ntBASIC20.22■□□□□ 0.83
Cux1P53564 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC20.22■□□□□ 0.83
Cux1P53564 AC161537.1-201ENSMUST00000226199 1015 ntBASIC20.22■□□□□ 0.83
Cux1P53564 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cux1P53564 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cux1P53564 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
Cux1P53564 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cux1P53564 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cux1P53564 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC20.22■□□□□ 0.83
Cux1P53564 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cux1P53564 Gm10729-202ENSMUST00000193403 1375 ntBASIC20.22■□□□□ 0.83
Cux1P53564 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cux1P53564 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cux1P53564 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cux1P53564 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cux1P53564 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Cux1P53564 Gnpda2-207ENSMUST00000173927 1011 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
Cux1P53564 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC20.22■□□□□ 0.83
Cux1P53564 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC20.22■□□□□ 0.83
Cux1P53564 Gm43947-201ENSMUST00000203019 959 ntBASIC20.22■□□□□ 0.83
Cux1P53564 Zfp706-203ENSMUST00000226453 517 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Cux1P53564 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cux1P53564 Gm10702-201ENSMUST00000098929 1268 ntBASIC20.22■□□□□ 0.83
Cux1P53564 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Cux1P53564 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cux1P53564 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cux1P53564 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cux1P53564 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Cux1P53564 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cux1P53564 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
Cux1P53564 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Cux1P53564 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Cux1P53564 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cux1P53564 Gm37201-201ENSMUST00000191845 523 ntBASIC20.21■□□□□ 0.83
Cux1P53564 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Cux1P53564 Abhd11os-203ENSMUST00000222613 363 ntBASIC20.21■□□□□ 0.83
Cux1P53564 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cux1P53564 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cux1P53564 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Cux1P53564 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cux1P53564 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cux1P53564 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Cux1P53564 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cux1P53564 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cux1P53564 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cux1P53564 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cux1P53564 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cux1P53564 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cux1P53564 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Cux1P53564 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cux1P53564 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Cux1P53564 Gm12566-201ENSMUST00000121479 359 ntBASIC20.2■□□□□ 0.82
Cux1P53564 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Cux1P53564 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Cux1P53564 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC20.2■□□□□ 0.82
Cux1P53564 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cux1P53564 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cux1P53564 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Cux1P53564 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC20.2■□□□□ 0.82
Cux1P53564 Syngr4-201ENSMUST00000039049 967 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cux1P53564 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cux1P53564 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cux1P53564 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Cux1P53564 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cux1P53564 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cux1P53564 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cux1P53564 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cux1P53564 Gm9333-201ENSMUST00000205452 1323 ntBASIC20.19■□□□□ 0.82
Cux1P53564 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Cux1P53564 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
Cux1P53564 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Cux1P53564 Gm45691-201ENSMUST00000206905 1120 ntBASIC20.19■□□□□ 0.82
Cux1P53564 Gm8913-201ENSMUST00000209491 641 ntBASIC20.19■□□□□ 0.82
Cux1P53564 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC20.19■□□□□ 0.82
Cux1P53564 Gm32468-201ENSMUST00000214199 1040 ntTSL 5 BASIC20.19■□□□□ 0.82
Cux1P53564 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Cux1P53564 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cux1P53564 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cux1P53564 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Cux1P53564 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Cux1P53564 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cux1P53564 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cux1P53564 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cux1P53564 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Cux1P53564 Gm5989-201ENSMUST00000096092 2077 ntBASIC20.19■□□□□ 0.82
Cux1P53564 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Cux1P53564 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Cux1P53564 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Cux1P53564 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cux1P53564 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cux1P53564 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cux1P53564 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC20.19■□□□□ 0.82
Cux1P53564 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 51.9 ms