Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 AC139350.1-201ENSMUST00000227064 1594 ntBASIC12.66□□□□□ -0.38
Cdx2P43241 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx2P43241 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Cdx2P43241 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx2P43241 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC12.66□□□□□ -0.38
Cdx2P43241 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx2P43241 Gm12134-201ENSMUST00000122109 520 ntBASIC12.66□□□□□ -0.38
Cdx2P43241 Gm11290-201ENSMUST00000124833 396 ntTSL 3 BASIC12.66□□□□□ -0.38
Cdx2P43241 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC12.66□□□□□ -0.38
Cdx2P43241 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx2P43241 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx2P43241 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Cdx2P43241 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC12.66□□□□□ -0.38
Cdx2P43241 Mir3547-201ENSMUST00000175461 88 ntBASIC12.66□□□□□ -0.38
Cdx2P43241 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC12.66□□□□□ -0.38
Cdx2P43241 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC12.66□□□□□ -0.38
Cdx2P43241 AC155637.1-201ENSMUST00000218560 636 ntBASIC12.66□□□□□ -0.38
Cdx2P43241 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx2P43241 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Cdx2P43241 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx2P43241 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx2P43241 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx2P43241 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx2P43241 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx2P43241 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx2P43241 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx2P43241 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx2P43241 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx2P43241 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx2P43241 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx2P43241 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx2P43241 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Cdx2P43241 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx2P43241 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx2P43241 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx2P43241 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx2P43241 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC12.66□□□□□ -0.38
Cdx2P43241 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx2P43241 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx2P43241 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx2P43241 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx2P43241 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx2P43241 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC12.65□□□□□ -0.38
Cdx2P43241 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx2P43241 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx2P43241 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx2P43241 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx2P43241 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC12.65□□□□□ -0.38
Cdx2P43241 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx2P43241 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx2P43241 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx2P43241 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Cdx2P43241 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx2P43241 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx2P43241 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx2P43241 Gm17208-201ENSMUST00000168388 535 ntBASIC12.65□□□□□ -0.38
Cdx2P43241 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC12.65□□□□□ -0.38
Cdx2P43241 Gm8738-201ENSMUST00000172606 329 ntBASIC12.65□□□□□ -0.38
Cdx2P43241 Gm37042-201ENSMUST00000193816 581 ntBASIC12.65□□□□□ -0.38
Cdx2P43241 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Cdx2P43241 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx2P43241 Gm45437-201ENSMUST00000209998 448 ntTSL 3 BASIC12.65□□□□□ -0.38
Cdx2P43241 CT030182.1-201ENSMUST00000225935 533 ntBASIC12.65□□□□□ -0.38
Cdx2P43241 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx2P43241 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx2P43241 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
Cdx2P43241 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx2P43241 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
Cdx2P43241 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
Cdx2P43241 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx2P43241 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC12.65□□□□□ -0.38
Cdx2P43241 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx2P43241 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC12.65□□□□□ -0.38
Cdx2P43241 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx2P43241 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
Cdx2P43241 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx2P43241 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx2P43241 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx2P43241 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
Cdx2P43241 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Cdx2P43241 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.39
Cdx2P43241 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cdx2P43241 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cdx2P43241 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cdx2P43241 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cdx2P43241 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Cdx2P43241 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cdx2P43241 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cdx2P43241 Adgrb2-206ENSMUST00000106018 4470 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Cdx2P43241 Gm10434-201ENSMUST00000101158 471 ntBASIC12.64□□□□□ -0.39
Cdx2P43241 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC12.64□□□□□ -0.39
Cdx2P43241 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cdx2P43241 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC12.64□□□□□ -0.39
Cdx2P43241 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
Cdx2P43241 Gm13316-201ENSMUST00000140537 691 ntBASIC12.64□□□□□ -0.39
Cdx2P43241 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Cdx2P43241 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cdx2P43241 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
Cdx2P43241 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC12.64□□□□□ -0.39
Cdx2P43241 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC12.64□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms