Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Usp4P35123 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Usp4P35123 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp4P35123 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp4P35123 Fam46a-201ENSMUST00000034802 5479 ntAPPRIS P3 TSL 3 BASIC14.04□□□□□ -0.16
Usp4P35123 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC14.04□□□□□ -0.16
Usp4P35123 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp4P35123 Adamts7-202ENSMUST00000113060 5098 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp4P35123 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp4P35123 Gm15459-201ENSMUST00000117405 1941 ntBASIC14.03□□□□□ -0.16
Usp4P35123 Gm8355-201ENSMUST00000177767 1941 ntBASIC14.03□□□□□ -0.16
Usp4P35123 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp4P35123 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC14.03□□□□□ -0.16
Usp4P35123 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC14.03□□□□□ -0.16
Usp4P35123 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp4P35123 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp4P35123 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Usp4P35123 Gm7488-201ENSMUST00000117148 684 ntBASIC14.03□□□□□ -0.16
Usp4P35123 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC14.03□□□□□ -0.16
Usp4P35123 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Usp4P35123 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Usp4P35123 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Usp4P35123 Gm27533-201ENSMUST00000183800 152 ntBASIC14.03□□□□□ -0.16
Usp4P35123 Gm27838-201ENSMUST00000184829 128 ntBASIC14.03□□□□□ -0.16
Usp4P35123 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC14.03□□□□□ -0.16
Usp4P35123 AC090659.2-201ENSMUST00000225378 1186 ntBASIC14.03□□□□□ -0.16
Usp4P35123 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp4P35123 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp4P35123 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp4P35123 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp4P35123 Gm45667-201ENSMUST00000210380 1316 ntBASIC14.03□□□□□ -0.16
Usp4P35123 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp4P35123 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
Usp4P35123 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp4P35123 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp4P35123 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
Usp4P35123 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Usp4P35123 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp4P35123 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp4P35123 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Usp4P35123 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp4P35123 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp4P35123 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp4P35123 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Usp4P35123 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp4P35123 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usp4P35123 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usp4P35123 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usp4P35123 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usp4P35123 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC14.02□□□□□ -0.16
Usp4P35123 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usp4P35123 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Usp4P35123 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usp4P35123 Gm43463-201ENSMUST00000195967 1803 ntBASIC14.02□□□□□ -0.16
Usp4P35123 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usp4P35123 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usp4P35123 Gm45643-201ENSMUST00000211364 1484 ntBASIC14.02□□□□□ -0.16
Usp4P35123 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usp4P35123 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp4P35123 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Usp4P35123 Gm24543-201ENSMUST00000103867 82 ntBASIC14.02□□□□□ -0.17
Usp4P35123 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
Usp4P35123 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC14.02□□□□□ -0.17
Usp4P35123 Gm14719-201ENSMUST00000121891 340 ntBASIC14.02□□□□□ -0.17
Usp4P35123 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Usp4P35123 Gm16215-201ENSMUST00000161990 637 ntBASIC14.02□□□□□ -0.17
Usp4P35123 Gm9719-201ENSMUST00000162765 543 ntBASIC14.02□□□□□ -0.17
Usp4P35123 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Usp4P35123 H2-Pa-201ENSMUST00000182803 626 ntBASIC14.02□□□□□ -0.17
Usp4P35123 AC132863.2-201ENSMUST00000226643 799 ntBASIC14.02□□□□□ -0.17
Usp4P35123 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Usp4P35123 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp4P35123 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Usp4P35123 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp4P35123 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp4P35123 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp4P35123 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Usp4P35123 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp4P35123 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp4P35123 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp4P35123 Gm5989-201ENSMUST00000096092 2077 ntBASIC14.02□□□□□ -0.17
Usp4P35123 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp4P35123 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp4P35123 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Usp4P35123 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp4P35123 AC151895.1-201ENSMUST00000219025 1742 ntBASIC14.01□□□□□ -0.17
Usp4P35123 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp4P35123 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Usp4P35123 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Usp4P35123 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Usp4P35123 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp4P35123 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
Usp4P35123 Gm44851-201ENSMUST00000205735 2309 ntBASIC14.01□□□□□ -0.17
Usp4P35123 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp4P35123 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC14.01□□□□□ -0.17
Usp4P35123 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC14.01□□□□□ -0.17
Usp4P35123 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
Usp4P35123 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC14.01□□□□□ -0.17
Usp4P35123 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Usp4P35123 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms