Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Sdc1P18828 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Sdc1P18828 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Sdc1P18828 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Sdc1P18828 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Sdc1P18828 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Sdc1P18828 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
Sdc1P18828 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC10.93□□□□□ -0.66
Sdc1P18828 Gabbr1-203ENSMUST00000172792 4036 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Sdc1P18828 Dpysl5-201ENSMUST00000088081 5022 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Sdc1P18828 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Sdc1P18828 Itgb4-204ENSMUST00000106460 5919 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
Sdc1P18828 Asrgl1-201ENSMUST00000049948 4195 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Sdc1P18828 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Sdc1P18828 Fancc-214ENSMUST00000161977 3111 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
Sdc1P18828 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Sdc1P18828 Olfr742-202ENSMUST00000213935 2117 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
Sdc1P18828 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC10.93□□□□□ -0.66
Sdc1P18828 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
Sdc1P18828 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC10.93□□□□□ -0.66
Sdc1P18828 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Sdc1P18828 Gm44292-201ENSMUST00000205194 2364 ntBASIC10.92□□□□□ -0.66
Sdc1P18828 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC10.92□□□□□ -0.66
Sdc1P18828 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
Sdc1P18828 AC123834.1-201ENSMUST00000225346 2043 ntBASIC10.92□□□□□ -0.66
Sdc1P18828 Wdr4-207ENSMUST00000171171 4153 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Sdc1P18828 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC10.92□□□□□ -0.66
Sdc1P18828 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Sdc1P18828 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Sdc1P18828 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Sdc1P18828 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Sdc1P18828 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC10.92□□□□□ -0.66
Sdc1P18828 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC10.92□□□□□ -0.66
Sdc1P18828 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
Sdc1P18828 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Sdc1P18828 Gm45266-201ENSMUST00000210111 2173 ntBASIC10.92□□□□□ -0.66
Sdc1P18828 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Sdc1P18828 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Sdc1P18828 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Sdc1P18828 Lrrc8c-201ENSMUST00000067924 6976 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Sdc1P18828 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Sdc1P18828 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC10.92□□□□□ -0.66
Sdc1P18828 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC10.92□□□□□ -0.66
Sdc1P18828 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Sdc1P18828 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC10.92□□□□□ -0.66
Sdc1P18828 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC10.92□□□□□ -0.66
Sdc1P18828 Gm6728-201ENSMUST00000178117 1065 ntBASIC10.92□□□□□ -0.66
Sdc1P18828 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC10.92□□□□□ -0.66
Sdc1P18828 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC10.92□□□□□ -0.66
Sdc1P18828 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC10.92□□□□□ -0.66
Sdc1P18828 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Sdc1P18828 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Sdc1P18828 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Sdc1P18828 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Sdc1P18828 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
Sdc1P18828 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC10.92□□□□□ -0.66
Sdc1P18828 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Sdc1P18828 Ankzf1-208ENSMUST00000152233 2739 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Sdc1P18828 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC10.92□□□□□ -0.66
Sdc1P18828 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC10.92□□□□□ -0.66
Sdc1P18828 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC10.91□□□□□ -0.66
Sdc1P18828 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC10.91□□□□□ -0.66
Sdc1P18828 Syt16-203ENSMUST00000221220 8156 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC10.91□□□□□ -0.66
Sdc1P18828 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Sdc1P18828 Wars-201ENSMUST00000109848 2831 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC10.91□□□□□ -0.66
Sdc1P18828 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC10.91□□□□□ -0.66
Sdc1P18828 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Scamp5-201ENSMUST00000046587 3225 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Cisd2-201ENSMUST00000029815 3361 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC10.91□□□□□ -0.66
Sdc1P18828 AA543401-201ENSMUST00000164248 1269 ntBASIC10.91□□□□□ -0.66
Sdc1P18828 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Sdc1P18828 Gm23634-201ENSMUST00000175071 91 ntBASIC10.91□□□□□ -0.66
Sdc1P18828 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Gm18027-201ENSMUST00000218947 619 ntBASIC10.91□□□□□ -0.66
Sdc1P18828 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Serpinf2-202ENSMUST00000108437 2179 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC10.91□□□□□ -0.66
Sdc1P18828 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC10.91□□□□□ -0.66
Sdc1P18828 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 50.9 ms