Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lmx1bO88609 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lmx1bO88609 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Lmx1bO88609 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lmx1bO88609 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lmx1bO88609 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lmx1bO88609 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lmx1bO88609 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lmx1bO88609 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lmx1bO88609 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lmx1bO88609 Gm20632-201ENSMUST00000176760 2427 ntBASIC12.13□□□□□ -0.47
Lmx1bO88609 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lmx1bO88609 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lmx1bO88609 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lmx1bO88609 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lmx1bO88609 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Lmx1bO88609 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Lmx1bO88609 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Lmx1bO88609 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lmx1bO88609 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lmx1bO88609 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lmx1bO88609 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lmx1bO88609 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lmx1bO88609 Gm15770-201ENSMUST00000117498 584 ntBASIC12.13□□□□□ -0.47
Lmx1bO88609 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC12.13□□□□□ -0.47
Lmx1bO88609 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC12.13□□□□□ -0.47
Lmx1bO88609 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC12.13□□□□□ -0.47
Lmx1bO88609 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Lmx1bO88609 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lmx1bO88609 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC12.13□□□□□ -0.47
Lmx1bO88609 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC12.13□□□□□ -0.47
Lmx1bO88609 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Lmx1bO88609 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lmx1bO88609 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lmx1bO88609 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lmx1bO88609 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lmx1bO88609 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lmx1bO88609 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Lmx1bO88609 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lmx1bO88609 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lmx1bO88609 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lmx1bO88609 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lmx1bO88609 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lmx1bO88609 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC12.13□□□□□ -0.47
Lmx1bO88609 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Lmx1bO88609 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Lmx1bO88609 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC12.13□□□□□ -0.47
Lmx1bO88609 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lmx1bO88609 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lmx1bO88609 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Lmx1bO88609 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
Lmx1bO88609 Gm38346-201ENSMUST00000192379 2639 ntBASIC12.12□□□□□ -0.47
Lmx1bO88609 Ntrk2-208ENSMUST00000225583 2719 ntBASIC12.12□□□□□ -0.47
Lmx1bO88609 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lmx1bO88609 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lmx1bO88609 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lmx1bO88609 AC154262.2-201ENSMUST00000224310 2293 ntBASIC12.12□□□□□ -0.47
Lmx1bO88609 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lmx1bO88609 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lmx1bO88609 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC12.12□□□□□ -0.47
Lmx1bO88609 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lmx1bO88609 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC12.12□□□□□ -0.47
Lmx1bO88609 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Lmx1bO88609 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lmx1bO88609 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lmx1bO88609 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lmx1bO88609 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Lmx1bO88609 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Lmx1bO88609 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Lmx1bO88609 Gm13612-201ENSMUST00000119276 390 ntBASIC12.12□□□□□ -0.47
Lmx1bO88609 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lmx1bO88609 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Lmx1bO88609 AY702102-202ENSMUST00000194651 1173 ntBASIC12.12□□□□□ -0.47
Lmx1bO88609 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Lmx1bO88609 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lmx1bO88609 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lmx1bO88609 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lmx1bO88609 AC131068.2-201ENSMUST00000226175 1453 ntBASIC12.12□□□□□ -0.47
Lmx1bO88609 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lmx1bO88609 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Lmx1bO88609 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lmx1bO88609 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lmx1bO88609 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lmx1bO88609 Ksr1-207ENSMUST00000226282 5260 ntBASIC12.12□□□□□ -0.47
Lmx1bO88609 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Lmx1bO88609 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lmx1bO88609 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Lmx1bO88609 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lmx1bO88609 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Lmx1bO88609 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC12.11□□□□□ -0.47
Lmx1bO88609 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 Gm37133-201ENSMUST00000192705 1922 ntBASIC12.11□□□□□ -0.47
Lmx1bO88609 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC12.11□□□□□ -0.47
Lmx1bO88609 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lmx1bO88609 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 53.6 ms