Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Cd93-201ENSMUST00000099269 6677 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hmgb3O54879 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Hmgb3O54879 Rgs8-201ENSMUST00000041776 8474 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hmgb3O54879 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hmgb3O54879 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Hmgb3O54879 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hmgb3O54879 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
Hmgb3O54879 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Hmgb3O54879 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hmgb3O54879 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hmgb3O54879 Pex5-205ENSMUST00000112532 3148 ntAPPRIS P4 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hmgb3O54879 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hmgb3O54879 Gm45706-201ENSMUST00000213063 2136 ntBASIC11.05□□□□□ -0.64
Hmgb3O54879 Kcnk16-202ENSMUST00000225596 2127 ntBASIC11.05□□□□□ -0.64
Hmgb3O54879 Gm10176-201ENSMUST00000159707 2264 ntBASIC11.05□□□□□ -0.64
Hmgb3O54879 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
Hmgb3O54879 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
Hmgb3O54879 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Hmgb3O54879 Madd-213ENSMUST00000111376 5927 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
Hmgb3O54879 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC11.05□□□□□ -0.64
Hmgb3O54879 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Hmgb3O54879 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hmgb3O54879 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC11.05□□□□□ -0.64
Hmgb3O54879 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Hmgb3O54879 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Hmgb3O54879 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hmgb3O54879 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
Hmgb3O54879 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC11.05□□□□□ -0.64
Hmgb3O54879 Zfyve26-201ENSMUST00000021547 9391 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hmgb3O54879 AC158538.1-201ENSMUST00000225870 294 ntBASIC11.05□□□□□ -0.64
Hmgb3O54879 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hmgb3O54879 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hmgb3O54879 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hmgb3O54879 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hmgb3O54879 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC11.05□□□□□ -0.64
Hmgb3O54879 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hmgb3O54879 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hmgb3O54879 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC11.05□□□□□ -0.64
Hmgb3O54879 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hmgb3O54879 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hmgb3O54879 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC11.04□□□□□ -0.64
Hmgb3O54879 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
Hmgb3O54879 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 Epha5-202ENSMUST00000113398 4830 ntTSL 5 BASIC11.04□□□□□ -0.64
Hmgb3O54879 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 Gm5939-201ENSMUST00000119613 2874 ntBASIC11.04□□□□□ -0.64
Hmgb3O54879 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC11.04□□□□□ -0.64
Hmgb3O54879 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 Myo18a-211ENSMUST00000130627 6202 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
Hmgb3O54879 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 Cdkl5-205ENSMUST00000198931 9796 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
Hmgb3O54879 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
Hmgb3O54879 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
Hmgb3O54879 Gm10327-201ENSMUST00000105222 1002 ntBASIC11.04□□□□□ -0.64
Hmgb3O54879 Gm15957-201ENSMUST00000118893 974 ntBASIC11.04□□□□□ -0.64
Hmgb3O54879 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC11.04□□□□□ -0.64
Hmgb3O54879 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC11.04□□□□□ -0.64
Hmgb3O54879 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC11.04□□□□□ -0.64
Hmgb3O54879 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 Gm5069-202ENSMUST00000192714 1011 ntBASIC11.04□□□□□ -0.64
Hmgb3O54879 Gm37806-201ENSMUST00000194524 6387 ntBASIC11.04□□□□□ -0.64
Hmgb3O54879 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC11.04□□□□□ -0.64
Hmgb3O54879 AC131187.1-201ENSMUST00000224567 809 ntBASIC11.04□□□□□ -0.64
Hmgb3O54879 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
Hmgb3O54879 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC11.04□□□□□ -0.64
Hmgb3O54879 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC11.04□□□□□ -0.64
Hmgb3O54879 Tnc-203ENSMUST00000107372 7106 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
Hmgb3O54879 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC11.04□□□□□ -0.64
Hmgb3O54879 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 Tro-202ENSMUST00000087258 6559 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 Csrnp2-201ENSMUST00000061457 4126 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 Gm27194-201ENSMUST00000175753 2936 ntBASIC11.04□□□□□ -0.64
Hmgb3O54879 Xirp1-201ENSMUST00000111635 5839 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hmgb3O54879 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hmgb3O54879 Gm8337-201ENSMUST00000187358 1938 ntBASIC11.03□□□□□ -0.64
Hmgb3O54879 Trak2-201ENSMUST00000027186 6189 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hmgb3O54879 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 158.8 ms