Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 H2-Pa-201ENSMUST00000182803 626 ntBASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 AL593843.1-201ENSMUST00000195891 145 ntBASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Arhgef33-209ENSMUST00000225223 714 ntBASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Gm7114-201ENSMUST00000190159 1789 ntBASIC12.64□□□□□ -0.39
Trim3Q9R1R2 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Gm43677-201ENSMUST00000198098 2378 ntBASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Ighv1-51-201ENSMUST00000192903 354 ntBASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Rims1-205ENSMUST00000097811 6446 ntAPPRIS P5 TSL 5 BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Trim3Q9R1R2 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 AC139580.1-202ENSMUST00000223574 928 ntBASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms