Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Scn4aQ9ER60 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Scn4aQ9ER60 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Scn4aQ9ER60 Gm43273-201ENSMUST00000199649 2594 ntBASIC17.77■□□□□ 0.44
Scn4aQ9ER60 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Scn4aQ9ER60 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Scn4aQ9ER60 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Scn4aQ9ER60 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
Scn4aQ9ER60 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Scn4aQ9ER60 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC17.77■□□□□ 0.43
Scn4aQ9ER60 Gm11422-201ENSMUST00000118925 1103 ntBASIC17.77■□□□□ 0.43
Scn4aQ9ER60 Gm6630-201ENSMUST00000119199 454 ntBASIC17.77■□□□□ 0.43
Scn4aQ9ER60 Gm15619-201ENSMUST00000128415 1294 ntTSL 3 BASIC17.77■□□□□ 0.43
Scn4aQ9ER60 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC17.77■□□□□ 0.43
Scn4aQ9ER60 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Scn4aQ9ER60 Gm37299-201ENSMUST00000193951 826 ntBASIC17.77■□□□□ 0.43
Scn4aQ9ER60 Crcp-204ENSMUST00000202163 931 ntTSL 2 BASIC17.77■□□□□ 0.43
Scn4aQ9ER60 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
Scn4aQ9ER60 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Scn4aQ9ER60 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Scn4aQ9ER60 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Scn4aQ9ER60 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Gm11979-201ENSMUST00000119629 743 ntBASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Gm5257-201ENSMUST00000121823 790 ntBASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Smim20-201ENSMUST00000147148 922 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Gm28166-201ENSMUST00000187637 620 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Gm37695-201ENSMUST00000191765 530 ntTSL 5 BASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Gm45079-201ENSMUST00000205627 461 ntTSL 3 BASIC17.76■□□□□ 0.43
Scn4aQ9ER60 6430531B16Rik-204ENSMUST00000209335 898 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Gm4924-205ENSMUST00000211099 490 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Gm45500-201ENSMUST00000211676 803 ntBASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Prss55-201ENSMUST00000089338 1032 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Scn4aQ9ER60 Rnf133-202ENSMUST00000115354 1333 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Scn4aQ9ER60 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Mir181d-201ENSMUST00000102383 72 ntBASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Gm27910-201ENSMUST00000185004 107 ntBASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Gm37458-201ENSMUST00000194055 410 ntBASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Gm42937-201ENSMUST00000197360 752 ntBASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Gm18460-201ENSMUST00000208088 464 ntBASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Gm36074-201ENSMUST00000221383 591 ntTSL 5 BASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Scn4aQ9ER60 AC034099.1-202ENSMUST00000133843 833 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Gm17877-201ENSMUST00000192578 814 ntBASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Chn2-212ENSMUST00000204115 783 ntTSL 5 BASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Gm31166-202ENSMUST00000210638 1268 ntTSL 3 BASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Gm4157-201ENSMUST00000211647 679 ntBASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Gm10334-201ENSMUST00000095999 876 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Scn4aQ9ER60 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Gm9361-201ENSMUST00000198695 1507 ntBASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Gm11509-201ENSMUST00000117358 325 ntBASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Gm8737-201ENSMUST00000122208 642 ntBASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Mir7677-201ENSMUST00000184226 67 ntBASIC17.74■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 66.6 ms