Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Gm5161-201ENSMUST00000075243 853 ntBASIC15.29■□□□□ 0.04
Trim11Q99PQ2 Hist1h2al-201ENSMUST00000091708 339 ntBASIC15.29■□□□□ 0.04
Trim11Q99PQ2 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim11Q99PQ2 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim11Q99PQ2 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim11Q99PQ2 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim11Q99PQ2 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Trim11Q99PQ2 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim11Q99PQ2 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim11Q99PQ2 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim11Q99PQ2 Gm43273-201ENSMUST00000199649 2594 ntBASIC15.29■□□□□ 0.04
Trim11Q99PQ2 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Gm44891-201ENSMUST00000208817 2223 ntBASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 AC155298.2-201ENSMUST00000225485 6226 ntBASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Gm12537-201ENSMUST00000119266 1002 ntBASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Gm12070-201ENSMUST00000119551 1002 ntBASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Gm12671-201ENSMUST00000119978 1002 ntBASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Gm13292-201ENSMUST00000120014 1000 ntBASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Gm12403-201ENSMUST00000121384 959 ntBASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Gm10359-201ENSMUST00000180167 1002 ntBASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Gm12033-201ENSMUST00000180654 1002 ntBASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Gm5559-201ENSMUST00000180755 1002 ntBASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Gm4335-201ENSMUST00000182581 1004 ntBASIC15.28■□□□□ 0.04
Trim11Q99PQ2 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Gm12500-202ENSMUST00000186471 2428 ntBASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Gm45638-201ENSMUST00000211507 2878 ntBASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim11Q99PQ2 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim11Q99PQ2 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Trim11Q99PQ2 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Trim11Q99PQ2 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim11Q99PQ2 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim11Q99PQ2 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Trim11Q99PQ2 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Trim11Q99PQ2 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim11Q99PQ2 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim11Q99PQ2 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim11Q99PQ2 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim11Q99PQ2 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim11Q99PQ2 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim11Q99PQ2 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim11Q99PQ2 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim11Q99PQ2 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Trim11Q99PQ2 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim11Q99PQ2 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim11Q99PQ2 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Trim11Q99PQ2 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Trim11Q99PQ2 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC15.27■□□□□ 0.04
Trim11Q99PQ2 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Trim11Q99PQ2 Mir7023-201ENSMUST00000185093 64 ntBASIC15.27■□□□□ 0.04
Trim11Q99PQ2 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC15.27■□□□□ 0.04
Trim11Q99PQ2 Gm17870-201ENSMUST00000219489 1174 ntBASIC15.27■□□□□ 0.04
Trim11Q99PQ2 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim11Q99PQ2 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim11Q99PQ2 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Trim11Q99PQ2 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim11Q99PQ2 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim11Q99PQ2 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
Trim11Q99PQ2 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim11Q99PQ2 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim11Q99PQ2 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
Trim11Q99PQ2 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim11Q99PQ2 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim11Q99PQ2 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms