Protein–RNA interactions for Protein: Q91Y16

Pcdha3, Protocadherin alpha 3, mousemouse

Predictions only

Length 942 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha3Q91Y16 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Pcdha3Q91Y16 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Pcdha3Q91Y16 Gm13730-201ENSMUST00000121036 1462 ntBASIC14.04□□□□□ -0.16
Pcdha3Q91Y16 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC14.04□□□□□ -0.16
Pcdha3Q91Y16 Gm44065-201ENSMUST00000203184 3527 ntBASIC14.04□□□□□ -0.16
Pcdha3Q91Y16 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Pcdha3Q91Y16 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Pcdha3Q91Y16 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC14.04□□□□□ -0.16
Pcdha3Q91Y16 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Pcdha3Q91Y16 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC14.04□□□□□ -0.16
Pcdha3Q91Y16 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Pcdha3Q91Y16 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Pcdha3Q91Y16 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Pcdha3Q91Y16 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Pcdha3Q91Y16 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Pcdha3Q91Y16 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Gm42748-201ENSMUST00000199354 2341 ntBASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Gm12490-201ENSMUST00000120255 560 ntBASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Gm11424-201ENSMUST00000121929 829 ntBASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 AC192088.1-201ENSMUST00000227561 301 ntBASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdha3Q91Y16 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Pcdha3Q91Y16 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.16
Pcdha3Q91Y16 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Pcdha3Q91Y16 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Pcdha3Q91Y16 Gm44891-201ENSMUST00000208817 2223 ntBASIC14.02□□□□□ -0.16
Pcdha3Q91Y16 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Pcdha3Q91Y16 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Pcdha3Q91Y16 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Pcdha3Q91Y16 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
Pcdha3Q91Y16 Tmed9-203ENSMUST00000224741 1450 ntBASIC14.02□□□□□ -0.16
Pcdha3Q91Y16 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Pcdha3Q91Y16 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC14.02□□□□□ -0.17
Pcdha3Q91Y16 Gm12416-201ENSMUST00000120911 1008 ntBASIC14.02□□□□□ -0.17
Pcdha3Q91Y16 Gm11918-201ENSMUST00000121660 179 ntBASIC14.02□□□□□ -0.17
Pcdha3Q91Y16 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Pcdha3Q91Y16 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Pcdha3Q91Y16 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC14.02□□□□□ -0.17
Pcdha3Q91Y16 Gm27701-201ENSMUST00000184498 110 ntBASIC14.02□□□□□ -0.17
Pcdha3Q91Y16 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Pcdha3Q91Y16 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC14.02□□□□□ -0.17
Pcdha3Q91Y16 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC14.02□□□□□ -0.17
Pcdha3Q91Y16 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Pcdha3Q91Y16 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Pcdha3Q91Y16 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Pcdha3Q91Y16 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Pcdha3Q91Y16 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Pcdha3Q91Y16 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Pcdha3Q91Y16 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Pcdha3Q91Y16 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Pcdha3Q91Y16 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Pcdha3Q91Y16 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Pcdha3Q91Y16 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Pcdha3Q91Y16 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Pcdha3Q91Y16 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Pcdha3Q91Y16 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Pcdha3Q91Y16 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC14.01□□□□□ -0.17
Pcdha3Q91Y16 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Pcdha3Q91Y16 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pcdha3Q91Y16 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Pcdha3Q91Y16 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pcdha3Q91Y16 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pcdha3Q91Y16 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pcdha3Q91Y16 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Pcdha3Q91Y16 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pcdha3Q91Y16 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pcdha3Q91Y16 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Pcdha3Q91Y16 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Pcdha3Q91Y16 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 57.6 ms