Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC15.1■□□□□ 0.01
Syne4Q8CII8 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Syne4Q8CII8 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Syne4Q8CII8 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
Syne4Q8CII8 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Mir6979-201ENSMUST00000183927 56 ntBASIC15.09■□□□□ 0.01
Syne4Q8CII8 Gm2260-201ENSMUST00000184965 657 ntBASIC15.09■□□□□ 0.01
Syne4Q8CII8 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Gm19963-201ENSMUST00000208413 1255 ntBASIC15.09■□□□□ 0.01
Syne4Q8CII8 Gm6458-201ENSMUST00000211573 635 ntBASIC15.09■□□□□ 0.01
Syne4Q8CII8 Gm18212-201ENSMUST00000211678 889 ntBASIC15.09■□□□□ 0.01
Syne4Q8CII8 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Syne4Q8CII8 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Syne4Q8CII8 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Syne4Q8CII8 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC15.08■□□□□ 0.01
Syne4Q8CII8 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Syne4Q8CII8 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Syne4Q8CII8 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Syne4Q8CII8 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0.01
Syne4Q8CII8 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Syne4Q8CII8 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Syne4Q8CII8 AC139054.1-201ENSMUST00000226898 1598 ntBASIC15.08■□□□□ 0
Syne4Q8CII8 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Syne4Q8CII8 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Syne4Q8CII8 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC15.08■□□□□ 0
Syne4Q8CII8 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Syne4Q8CII8 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC15.08■□□□□ 0
Syne4Q8CII8 B9d1os-201ENSMUST00000137010 674 ntBASIC15.08■□□□□ 0
Syne4Q8CII8 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC15.08■□□□□ 0
Syne4Q8CII8 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
Syne4Q8CII8 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC15.08■□□□□ 0
Syne4Q8CII8 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC15.08■□□□□ 0
Syne4Q8CII8 Gm18615-201ENSMUST00000222919 1031 ntBASIC15.08■□□□□ 0
Syne4Q8CII8 AC069562.3-201ENSMUST00000225387 587 ntBASIC15.08■□□□□ 0
Syne4Q8CII8 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Syne4Q8CII8 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Syne4Q8CII8 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC15.08■□□□□ 0
Syne4Q8CII8 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Syne4Q8CII8 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC15.08■□□□□ 0
Syne4Q8CII8 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Syne4Q8CII8 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Syne4Q8CII8 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Syne4Q8CII8 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Syne4Q8CII8 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC15.07■□□□□ 0
Syne4Q8CII8 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC15.07■□□□□ 0
Syne4Q8CII8 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Syne4Q8CII8 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Syne4Q8CII8 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Syne4Q8CII8 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Syne4Q8CII8 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Syne4Q8CII8 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Syne4Q8CII8 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Syne4Q8CII8 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC15.07■□□□□ 0
Syne4Q8CII8 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Syne4Q8CII8 Gm9678-201ENSMUST00000198979 1149 ntBASIC15.07■□□□□ 0
Syne4Q8CII8 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Syne4Q8CII8 Gm44967-201ENSMUST00000207047 631 ntBASIC15.07■□□□□ 0
Syne4Q8CII8 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Syne4Q8CII8 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC15.07■□□□□ 0
Syne4Q8CII8 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC15.07■□□□□ 0
Syne4Q8CII8 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Syne4Q8CII8 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC15.07■□□□□ 0
Syne4Q8CII8 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Syne4Q8CII8 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC15.07■□□□□ 0
Syne4Q8CII8 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Syne4Q8CII8 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Syne4Q8CII8 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC15.07■□□□□ 0
Syne4Q8CII8 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Syne4Q8CII8 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 80.7 ms