Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC18.82■□□□□ 0.6
Usp47Q8BY87 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp47Q8BY87 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Usp47Q8BY87 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp47Q8BY87 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp47Q8BY87 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp47Q8BY87 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp47Q8BY87 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
Usp47Q8BY87 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC18.82■□□□□ 0.6
Usp47Q8BY87 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp47Q8BY87 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Usp47Q8BY87 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp47Q8BY87 AC139054.1-201ENSMUST00000226898 1598 ntBASIC18.82■□□□□ 0.6
Usp47Q8BY87 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp47Q8BY87 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Usp47Q8BY87 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp47Q8BY87 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp47Q8BY87 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp47Q8BY87 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp47Q8BY87 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Usp47Q8BY87 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp47Q8BY87 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC18.81■□□□□ 0.6
Usp47Q8BY87 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Usp47Q8BY87 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC18.81■□□□□ 0.6
Usp47Q8BY87 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC18.81■□□□□ 0.6
Usp47Q8BY87 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC18.81■□□□□ 0.6
Usp47Q8BY87 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp47Q8BY87 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp47Q8BY87 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp47Q8BY87 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp47Q8BY87 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC18.81■□□□□ 0.6
Usp47Q8BY87 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Usp47Q8BY87 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp47Q8BY87 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC18.81■□□□□ 0.6
Usp47Q8BY87 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp47Q8BY87 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp47Q8BY87 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp47Q8BY87 Gm5187-201ENSMUST00000117317 991 ntBASIC18.81■□□□□ 0.6
Usp47Q8BY87 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Usp47Q8BY87 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC18.81■□□□□ 0.6
Usp47Q8BY87 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Usp47Q8BY87 Gm6458-201ENSMUST00000211573 635 ntBASIC18.81■□□□□ 0.6
Usp47Q8BY87 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Usp47Q8BY87 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Usp47Q8BY87 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Usp47Q8BY87 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Usp47Q8BY87 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp47Q8BY87 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Usp47Q8BY87 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp47Q8BY87 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp47Q8BY87 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp47Q8BY87 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp47Q8BY87 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC18.8■□□□□ 0.6
Usp47Q8BY87 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp47Q8BY87 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Usp47Q8BY87 Gm2231-201ENSMUST00000125661 612 ntBASIC18.8■□□□□ 0.6
Usp47Q8BY87 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp47Q8BY87 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC18.8■□□□□ 0.6
Usp47Q8BY87 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Usp47Q8BY87 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp47Q8BY87 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp47Q8BY87 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp47Q8BY87 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp47Q8BY87 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Usp47Q8BY87 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp47Q8BY87 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp47Q8BY87 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp47Q8BY87 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp47Q8BY87 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp47Q8BY87 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp47Q8BY87 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp47Q8BY87 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp47Q8BY87 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp47Q8BY87 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp47Q8BY87 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Usp47Q8BY87 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Usp47Q8BY87 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC18.79■□□□□ 0.6
Usp47Q8BY87 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Usp47Q8BY87 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp47Q8BY87 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp47Q8BY87 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp47Q8BY87 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Usp47Q8BY87 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp47Q8BY87 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Usp47Q8BY87 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC18.79■□□□□ 0.6
Usp47Q8BY87 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Usp47Q8BY87 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC18.79■□□□□ 0.6
Usp47Q8BY87 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC18.79■□□□□ 0.6
Usp47Q8BY87 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC18.79■□□□□ 0.6
Usp47Q8BY87 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC18.79■□□□□ 0.6
Usp47Q8BY87 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp47Q8BY87 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
Usp47Q8BY87 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC18.79■□□□□ 0.6
Usp47Q8BY87 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp47Q8BY87 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC18.78■□□□□ 0.6
Usp47Q8BY87 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp47Q8BY87 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp47Q8BY87 Gm15459-201ENSMUST00000117405 1941 ntBASIC18.78■□□□□ 0.6
Usp47Q8BY87 Gm8355-201ENSMUST00000177767 1941 ntBASIC18.78■□□□□ 0.6
Usp47Q8BY87 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms