Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp40Q8BWR4 Gm9368-201ENSMUST00000219348 831 ntBASIC18.29■□□□□ 0.52
Usp40Q8BWR4 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Usp40Q8BWR4 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Usp40Q8BWR4 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Usp40Q8BWR4 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp40Q8BWR4 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp40Q8BWR4 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC18.29■□□□□ 0.52
Usp40Q8BWR4 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp40Q8BWR4 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp40Q8BWR4 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC18.29■□□□□ 0.52
Usp40Q8BWR4 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Il17rd-203ENSMUST00000225146 3366 ntBASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Gm5639-201ENSMUST00000122305 2403 ntBASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp40Q8BWR4 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Usp40Q8BWR4 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC18.27■□□□□ 0.52
Usp40Q8BWR4 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.52
Usp40Q8BWR4 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Usp40Q8BWR4 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC18.27■□□□□ 0.52
Usp40Q8BWR4 S100a14-202ENSMUST00000167598 1059 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Usp40Q8BWR4 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Usp40Q8BWR4 Gm6458-201ENSMUST00000211573 635 ntBASIC18.27■□□□□ 0.52
Usp40Q8BWR4 AC135669.1-202ENSMUST00000216742 540 ntBASIC18.27■□□□□ 0.52
Usp40Q8BWR4 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Usp40Q8BWR4 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Usp40Q8BWR4 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Usp40Q8BWR4 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Usp40Q8BWR4 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Usp40Q8BWR4 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Usp40Q8BWR4 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.52
Usp40Q8BWR4 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC18.27■□□□□ 0.52
Usp40Q8BWR4 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Usp40Q8BWR4 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Usp40Q8BWR4 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
Usp40Q8BWR4 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Usp40Q8BWR4 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
Usp40Q8BWR4 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Usp40Q8BWR4 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
Usp40Q8BWR4 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Usp40Q8BWR4 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Usp40Q8BWR4 Gm4782-201ENSMUST00000168705 2046 ntBASIC18.27■□□□□ 0.51
Usp40Q8BWR4 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp40Q8BWR4 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp40Q8BWR4 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp40Q8BWR4 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp40Q8BWR4 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC18.26■□□□□ 0.51
Usp40Q8BWR4 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp40Q8BWR4 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp40Q8BWR4 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Usp40Q8BWR4 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC18.26■□□□□ 0.51
Usp40Q8BWR4 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Usp40Q8BWR4 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC18.26■□□□□ 0.51
Usp40Q8BWR4 Gm6023-201ENSMUST00000118217 606 ntBASIC18.26■□□□□ 0.51
Usp40Q8BWR4 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Usp40Q8BWR4 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC18.26■□□□□ 0.51
Usp40Q8BWR4 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp40Q8BWR4 n-R5s77-201ENSMUST00000083757 119 ntBASIC18.26■□□□□ 0.51
Usp40Q8BWR4 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Usp40Q8BWR4 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Usp40Q8BWR4 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp40Q8BWR4 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp40Q8BWR4 Gm3756-201ENSMUST00000169182 1355 ntBASIC18.26■□□□□ 0.51
Usp40Q8BWR4 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp40Q8BWR4 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Usp40Q8BWR4 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Usp40Q8BWR4 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Usp40Q8BWR4 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Usp40Q8BWR4 Gm12241-201ENSMUST00000118330 726 ntBASIC18.25■□□□□ 0.51
Usp40Q8BWR4 Gm7895-201ENSMUST00000187459 1173 ntBASIC18.25■□□□□ 0.51
Usp40Q8BWR4 Gm38241-201ENSMUST00000192641 898 ntBASIC18.25■□□□□ 0.51
Usp40Q8BWR4 Gm38341-201ENSMUST00000195357 515 ntBASIC18.25■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 53.6 ms