Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Nrxn1-202ENSMUST00000072671 8118 ntTSL 5 BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 2900026A02Rik-201ENSMUST00000050125 5876 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Gm22018-201ENSMUST00000104357 131 ntBASIC11.57□□□□□ -0.56
Nkx3-1P97436 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Gm17823-201ENSMUST00000217830 1006 ntBASIC11.57□□□□□ -0.56
Nkx3-1P97436 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Nkx3-1P97436 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Nkx3-1P97436 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Nkx3-1P97436 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Nkx3-1P97436 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Nkx3-1P97436 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
Nkx3-1P97436 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
Nkx3-1P97436 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC11.56□□□□□ -0.56
Nkx3-1P97436 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Nkx3-1P97436 Gm11618-201ENSMUST00000117946 267 ntBASIC11.56□□□□□ -0.56
Nkx3-1P97436 Gm14723-201ENSMUST00000118686 215 ntBASIC11.56□□□□□ -0.56
Nkx3-1P97436 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Nkx3-1P97436 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Nkx3-1P97436 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC11.56□□□□□ -0.56
Nkx3-1P97436 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Nkx3-1P97436 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC11.56□□□□□ -0.56
Nkx3-1P97436 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Nkx3-1P97436 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC11.56□□□□□ -0.56
Nkx3-1P97436 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
Nkx3-1P97436 AC173210.1-201ENSMUST00000222341 1131 ntBASIC11.56□□□□□ -0.56
Nkx3-1P97436 AC140406.1-201ENSMUST00000226481 465 ntBASIC11.56□□□□□ -0.56
Nkx3-1P97436 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC11.56□□□□□ -0.56
Nkx3-1P97436 Gm10146-201ENSMUST00000072739 309 ntBASIC11.56□□□□□ -0.56
Nkx3-1P97436 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Nkx3-1P97436 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Nkx3-1P97436 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC11.56□□□□□ -0.56
Nkx3-1P97436 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC11.56□□□□□ -0.56
Nkx3-1P97436 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Nkx3-1P97436 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Nkx3-1P97436 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC11.56□□□□□ -0.56
Nkx3-1P97436 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Nkx3-1P97436 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
Nkx3-1P97436 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Nkx3-1P97436 Gm5620-201ENSMUST00000077991 1348 ntBASIC11.56□□□□□ -0.56
Nkx3-1P97436 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Nkx3-1P97436 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Nkx3-1P97436 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC11.55□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 11 ms