Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col18a1P39061 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC17.33■□□□□ 0.36
Col18a1P39061 Gm9387-201ENSMUST00000098624 1320 ntBASIC17.33■□□□□ 0.36
Col18a1P39061 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col18a1P39061 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC17.33■□□□□ 0.36
Col18a1P39061 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col18a1P39061 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col18a1P39061 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Col18a1P39061 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col18a1P39061 Plgrkt-209ENSMUST00000152936 604 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Col18a1P39061 Gm20392-201ENSMUST00000173047 701 ntBASIC17.33■□□□□ 0.36
Col18a1P39061 Timm10b-210ENSMUST00000209588 373 ntTSL 3 BASIC17.33■□□□□ 0.36
Col18a1P39061 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col18a1P39061 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col18a1P39061 Slc6a9-210ENSMUST00000169885 1876 ntTSL 5 BASIC17.33■□□□□ 0.36
Col18a1P39061 Gm28182-201ENSMUST00000188354 2477 ntBASIC17.33■□□□□ 0.36
Col18a1P39061 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col18a1P39061 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Col18a1P39061 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col18a1P39061 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Col18a1P39061 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col18a1P39061 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Col18a1P39061 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col18a1P39061 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col18a1P39061 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col18a1P39061 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC17.32■□□□□ 0.36
Col18a1P39061 Pmp22-202ENSMUST00000108700 733 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col18a1P39061 Gm11246-201ENSMUST00000120880 345 ntBASIC17.32■□□□□ 0.36
Col18a1P39061 Gm23218-201ENSMUST00000158124 276 ntBASIC17.32■□□□□ 0.36
Col18a1P39061 4933408A14Rik-201ENSMUST00000199037 729 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Col18a1P39061 CT030637.1-201ENSMUST00000228016 669 ntBASIC17.32■□□□□ 0.36
Col18a1P39061 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col18a1P39061 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Col18a1P39061 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col18a1P39061 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col18a1P39061 Gm7114-201ENSMUST00000190159 1789 ntBASIC17.32■□□□□ 0.36
Col18a1P39061 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC17.32■□□□□ 0.36
Col18a1P39061 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col18a1P39061 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Col18a1P39061 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col18a1P39061 Ywhaq-ps2-201ENSMUST00000117738 643 ntBASIC17.31■□□□□ 0.36
Col18a1P39061 Gm15573-201ENSMUST00000119487 540 ntBASIC17.31■□□□□ 0.36
Col18a1P39061 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC17.31■□□□□ 0.36
Col18a1P39061 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Col18a1P39061 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC17.31■□□□□ 0.36
Col18a1P39061 Gm19166-201ENSMUST00000196041 1063 ntBASIC17.31■□□□□ 0.36
Col18a1P39061 Hopx-201ENSMUST00000081964 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col18a1P39061 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Col18a1P39061 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col18a1P39061 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC17.31■□□□□ 0.36
Col18a1P39061 Gm38355-201ENSMUST00000192514 1570 ntBASIC17.31■□□□□ 0.36
Col18a1P39061 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col18a1P39061 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Col18a1P39061 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col18a1P39061 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col18a1P39061 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col18a1P39061 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col18a1P39061 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Col18a1P39061 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col18a1P39061 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col18a1P39061 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col18a1P39061 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col18a1P39061 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Col18a1P39061 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col18a1P39061 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC17.3■□□□□ 0.36
Col18a1P39061 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Col18a1P39061 Gm16323-201ENSMUST00000134920 556 ntTSL 3 BASIC17.3■□□□□ 0.36
Col18a1P39061 Gm10550-201ENSMUST00000188846 982 ntTSL 2 BASIC17.3■□□□□ 0.36
Col18a1P39061 Gm37028-201ENSMUST00000194276 107 ntBASIC17.3■□□□□ 0.36
Col18a1P39061 Gm33201-201ENSMUST00000204791 855 ntTSL 3 BASIC17.3■□□□□ 0.36
Col18a1P39061 Gm44980-201ENSMUST00000205826 314 ntBASIC17.3■□□□□ 0.36
Col18a1P39061 Olfr1347-205ENSMUST00000220413 964 ntBASIC17.3■□□□□ 0.36
Col18a1P39061 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Col18a1P39061 Omt2b-201ENSMUST00000043734 735 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Col18a1P39061 Ifnab-201ENSMUST00000071378 1058 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Col18a1P39061 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Col18a1P39061 1810009A15Rik-201ENSMUST00000096251 806 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col18a1P39061 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col18a1P39061 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col18a1P39061 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Col18a1P39061 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Col18a1P39061 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col18a1P39061 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC17.3■□□□□ 0.36
Col18a1P39061 Gm18626-201ENSMUST00000221512 1409 ntBASIC17.3■□□□□ 0.36
Col18a1P39061 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
Col18a1P39061 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
Col18a1P39061 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col18a1P39061 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col18a1P39061 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Col18a1P39061 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col18a1P39061 Gm9768-201ENSMUST00000206007 2861 ntBASIC17.3■□□□□ 0.36
Col18a1P39061 Gstm4-202ENSMUST00000106670 777 ntTSL 3 BASIC17.3■□□□□ 0.36
Col18a1P39061 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
Col18a1P39061 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Col18a1P39061 BC026585-203ENSMUST00000193791 778 ntTSL 2 BASIC17.3■□□□□ 0.36
Col18a1P39061 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Col18a1P39061 Olfr354-201ENSMUST00000068475 1084 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Col18a1P39061 Olfr76-201ENSMUST00000087822 1048 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Col18a1P39061 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col18a1P39061 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 44.8 ms