Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Msx1P13297 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC12.8□□□□□ -0.36
Msx1P13297 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC12.8□□□□□ -0.36
Msx1P13297 Gm43553-201ENSMUST00000200900 685 ntBASIC12.8□□□□□ -0.36
Msx1P13297 Gm7287-201ENSMUST00000205267 602 ntBASIC12.8□□□□□ -0.36
Msx1P13297 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC12.8□□□□□ -0.36
Msx1P13297 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Msx1P13297 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Msx1P13297 5930422O12Rik-201ENSMUST00000059351 840 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Msx1P13297 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Msx1P13297 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Msx1P13297 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Msx1P13297 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC12.8□□□□□ -0.36
Msx1P13297 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Msx1P13297 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC12.8□□□□□ -0.36
Msx1P13297 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Msx1P13297 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
Msx1P13297 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Msx1P13297 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Msx1P13297 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Msx1P13297 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Msx1P13297 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Msx1P13297 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Msx1P13297 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Msx1P13297 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Msx1P13297 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Msx1P13297 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC12.8□□□□□ -0.36
Msx1P13297 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Msx1P13297 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Msx1P13297 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Msx1P13297 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Msx1P13297 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Msx1P13297 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Msx1P13297 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
Msx1P13297 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Msx1P13297 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC12.79□□□□□ -0.36
Msx1P13297 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Msx1P13297 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Msx1P13297 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Msx1P13297 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Msx1P13297 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Msx1P13297 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Msx1P13297 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Msx1P13297 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Msx1P13297 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC12.79□□□□□ -0.36
Msx1P13297 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Msx1P13297 Zkscan14-203ENSMUST00000198959 2243 ntBASIC12.79□□□□□ -0.36
Msx1P13297 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC12.79□□□□□ -0.36
Msx1P13297 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC12.79□□□□□ -0.36
Msx1P13297 Gm15429-201ENSMUST00000151268 798 ntBASIC12.79□□□□□ -0.36
Msx1P13297 Gm12718-202ENSMUST00000156144 660 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Msx1P13297 Gm27847-201ENSMUST00000183711 107 ntBASIC12.79□□□□□ -0.36
Msx1P13297 Gm27375-201ENSMUST00000183799 107 ntBASIC12.79□□□□□ -0.36
Msx1P13297 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
Msx1P13297 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Msx1P13297 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC12.79□□□□□ -0.36
Msx1P13297 Gm8679-201ENSMUST00000210651 1036 ntBASIC12.79□□□□□ -0.36
Msx1P13297 Gm7561-201ENSMUST00000211203 886 ntBASIC12.79□□□□□ -0.36
Msx1P13297 AC166997.1-201ENSMUST00000225122 572 ntBASIC12.79□□□□□ -0.36
Msx1P13297 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Msx1P13297 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Msx1P13297 Mir497b-201ENSMUST00000093601 125 ntBASIC12.79□□□□□ -0.36
Msx1P13297 Gm37133-201ENSMUST00000192705 1922 ntBASIC12.79□□□□□ -0.36
Msx1P13297 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Msx1P13297 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC12.79□□□□□ -0.36
Msx1P13297 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Msx1P13297 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Msx1P13297 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Msx1P13297 Gm42872-201ENSMUST00000200026 1967 ntBASIC12.79□□□□□ -0.36
Msx1P13297 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Msx1P13297 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Msx1P13297 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Msx1P13297 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Msx1P13297 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Msx1P13297 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Msx1P13297 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Msx1P13297 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Msx1P13297 Gm43435-201ENSMUST00000199996 1438 ntBASIC12.79□□□□□ -0.36
Msx1P13297 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Msx1P13297 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Msx1P13297 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Msx1P13297 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Msx1P13297 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Msx1P13297 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC12.78□□□□□ -0.36
Msx1P13297 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Msx1P13297 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Msx1P13297 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Msx1P13297 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Msx1P13297 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC12.78□□□□□ -0.36
Msx1P13297 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Msx1P13297 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Msx1P13297 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Msx1P13297 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Msx1P13297 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC12.78□□□□□ -0.36
Msx1P13297 Gm20854-201ENSMUST00000178889 1002 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Msx1P13297 Gm8652-201ENSMUST00000181363 964 ntBASIC12.78□□□□□ -0.36
Msx1P13297 Gm27572-201ENSMUST00000183702 255 ntBASIC12.78□□□□□ -0.36
Msx1P13297 Gm9299-201ENSMUST00000206392 1140 ntBASIC12.78□□□□□ -0.36
Msx1P13297 Gm45072-201ENSMUST00000208673 929 ntBASIC12.78□□□□□ -0.36
Msx1P13297 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 67.7 ms