Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Gm13517-201ENSMUST00000120782 1495 ntBASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Gm6415-201ENSMUST00000118488 348 ntBASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Gm25948-201ENSMUST00000175334 112 ntBASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Gm44872-201ENSMUST00000207864 420 ntBASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 C3-201ENSMUST00000024988 5136 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Ddx28Q9CWT6 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Ddx28Q9CWT6 Gm15889-202ENSMUST00000212669 2443 ntBASIC12.61□□□□□ -0.39
Ddx28Q9CWT6 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Ddx28Q9CWT6 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Ddx28Q9CWT6 Ap1g2-201ENSMUST00000036041 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Ddx28Q9CWT6 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Ddx28Q9CWT6 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC12.61□□□□□ -0.39
Ddx28Q9CWT6 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Ddx28Q9CWT6 Klhl14-201ENSMUST00000049105 4018 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Ddx28Q9CWT6 AC154747.3-201ENSMUST00000224471 3470 ntBASIC12.61□□□□□ -0.39
Ddx28Q9CWT6 Gm24543-201ENSMUST00000103867 82 ntBASIC12.61□□□□□ -0.39
Ddx28Q9CWT6 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Ddx28Q9CWT6 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Ddx28Q9CWT6 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Ddx28Q9CWT6 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Ddx28Q9CWT6 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Ddx28Q9CWT6 Mir6956-201ENSMUST00000183598 62 ntBASIC12.61□□□□□ -0.39
Ddx28Q9CWT6 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC12.61□□□□□ -0.39
Ddx28Q9CWT6 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Ddx28Q9CWT6 Kcnd1-201ENSMUST00000009875 5287 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Ddx28Q9CWT6 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Ddx28Q9CWT6 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Ddx28Q9CWT6 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC12.61□□□□□ -0.39
Ddx28Q9CWT6 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Ddx28Q9CWT6 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Ddx28Q9CWT6 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Ddx28Q9CWT6 Gm12020-201ENSMUST00000119030 2042 ntBASIC12.61□□□□□ -0.39
Ddx28Q9CWT6 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Camta2-205ENSMUST00000119120 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Egfem1-202ENSMUST00000119598 2687 ntAPPRIS P4 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Vwa7-201ENSMUST00000007245 4313 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx28Q9CWT6 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 50.4 ms