Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc28bQ8CEG5 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc28bQ8CEG5 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc28bQ8CEG5 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc28bQ8CEG5 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc28bQ8CEG5 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc28bQ8CEG5 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc28bQ8CEG5 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc28bQ8CEG5 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc28bQ8CEG5 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ccdc28bQ8CEG5 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Ccdc28bQ8CEG5 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Ccdc28bQ8CEG5 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ccdc28bQ8CEG5 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
Ccdc28bQ8CEG5 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC13.27□□□□□ -0.28
Ccdc28bQ8CEG5 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC13.27□□□□□ -0.28
Ccdc28bQ8CEG5 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ccdc28bQ8CEG5 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Ccdc28bQ8CEG5 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ccdc28bQ8CEG5 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ccdc28bQ8CEG5 Gm43134-201ENSMUST00000199434 1886 ntBASIC13.27□□□□□ -0.28
Ccdc28bQ8CEG5 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC13.27□□□□□ -0.28
Ccdc28bQ8CEG5 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ccdc28bQ8CEG5 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ccdc28bQ8CEG5 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ccdc28bQ8CEG5 Gm37014-201ENSMUST00000194723 2253 ntBASIC13.27□□□□□ -0.28
Ccdc28bQ8CEG5 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Gm17271-201ENSMUST00000165535 355 ntBASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Gm4971-201ENSMUST00000205991 1108 ntBASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Gm18934-201ENSMUST00000216671 1044 ntBASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Gm45667-201ENSMUST00000210380 1316 ntBASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Plet1-201ENSMUST00000114474 1689 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Nudt18-202ENSMUST00000228554 3619 ntBASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Ccdc28bQ8CEG5 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Ccdc28bQ8CEG5 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC13.26□□□□□ -0.29
Ccdc28bQ8CEG5 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28bQ8CEG5 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28bQ8CEG5 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC13.26□□□□□ -0.29
Ccdc28bQ8CEG5 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Ccdc28bQ8CEG5 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Ccdc28bQ8CEG5 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC13.26□□□□□ -0.29
Ccdc28bQ8CEG5 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28bQ8CEG5 Mir3113-201ENSMUST00000175478 76 ntBASIC13.26□□□□□ -0.29
Ccdc28bQ8CEG5 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28bQ8CEG5 Gm5628-201ENSMUST00000222318 1049 ntBASIC13.26□□□□□ -0.29
Ccdc28bQ8CEG5 Nupl1-206ENSMUST00000225111 2936 ntBASIC13.26□□□□□ -0.29
Ccdc28bQ8CEG5 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28bQ8CEG5 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28bQ8CEG5 Scamp5-201ENSMUST00000046587 3225 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28bQ8CEG5 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28bQ8CEG5 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28bQ8CEG5 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC13.26□□□□□ -0.29
Ccdc28bQ8CEG5 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Ccdc28bQ8CEG5 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28bQ8CEG5 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28bQ8CEG5 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28bQ8CEG5 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28bQ8CEG5 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28bQ8CEG5 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28bQ8CEG5 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
Ccdc28bQ8CEG5 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Ccdc28bQ8CEG5 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ccdc28bQ8CEG5 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ccdc28bQ8CEG5 Slc44a1-204ENSMUST00000107647 2176 ntTSL 2 BASIC13.25□□□□□ -0.29
Ccdc28bQ8CEG5 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ccdc28bQ8CEG5 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ccdc28bQ8CEG5 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Ccdc28bQ8CEG5 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ccdc28bQ8CEG5 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ccdc28bQ8CEG5 Naa15-205ENSMUST00000193266 7480 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Ccdc28bQ8CEG5 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ccdc28bQ8CEG5 Nrn1-204ENSMUST00000224323 1779 ntBASIC13.25□□□□□ -0.29
Ccdc28bQ8CEG5 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Ccdc28bQ8CEG5 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Ccdc28bQ8CEG5 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms