Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm6091-201ENSMUST00000098307 165 ntBASIC15.83■□□□□ 0.12
Trim56Q80VI1 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim56Q80VI1 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim56Q80VI1 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim56Q80VI1 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim56Q80VI1 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC15.83■□□□□ 0.12
Trim56Q80VI1 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
Trim56Q80VI1 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim56Q80VI1 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim56Q80VI1 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim56Q80VI1 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Trim56Q80VI1 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim56Q80VI1 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim56Q80VI1 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim56Q80VI1 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim56Q80VI1 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim56Q80VI1 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
Trim56Q80VI1 Gm10327-201ENSMUST00000105222 1002 ntBASIC15.82■□□□□ 0.12
Trim56Q80VI1 Gm10156-201ENSMUST00000122364 462 ntBASIC15.82■□□□□ 0.12
Trim56Q80VI1 Gm9124-201ENSMUST00000191789 1092 ntBASIC15.82■□□□□ 0.12
Trim56Q80VI1 Gm9113-201ENSMUST00000192510 1018 ntBASIC15.82■□□□□ 0.12
Trim56Q80VI1 Gm9131-201ENSMUST00000193557 1089 ntBASIC15.82■□□□□ 0.12
Trim56Q80VI1 Gm9121-201ENSMUST00000193749 1071 ntBASIC15.82■□□□□ 0.12
Trim56Q80VI1 Gm44799-201ENSMUST00000207639 1202 ntBASIC15.82■□□□□ 0.12
Trim56Q80VI1 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC15.82■□□□□ 0.12
Trim56Q80VI1 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim56Q80VI1 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC15.82■□□□□ 0.12
Trim56Q80VI1 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim56Q80VI1 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
Trim56Q80VI1 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC15.82■□□□□ 0.12
Trim56Q80VI1 Gm13050-201ENSMUST00000122149 1345 ntBASIC15.82■□□□□ 0.12
Trim56Q80VI1 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Trim56Q80VI1 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim56Q80VI1 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim56Q80VI1 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim56Q80VI1 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim56Q80VI1 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Trim56Q80VI1 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim56Q80VI1 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Trim56Q80VI1 Gm45242-201ENSMUST00000210666 2129 ntBASIC15.82■□□□□ 0.12
Trim56Q80VI1 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim56Q80VI1 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC15.82■□□□□ 0.12
Trim56Q80VI1 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Gm12390-201ENSMUST00000117897 397 ntBASIC15.81■□□□□ 0.12
Trim56Q80VI1 Mup-ps23-201ENSMUST00000118063 630 ntBASIC15.81■□□□□ 0.12
Trim56Q80VI1 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Trim56Q80VI1 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Gm27486-201ENSMUST00000184923 80 ntBASIC15.81■□□□□ 0.12
Trim56Q80VI1 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Gm37748-201ENSMUST00000194379 1140 ntBASIC15.81■□□□□ 0.12
Trim56Q80VI1 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim56Q80VI1 AC134335.2-201ENSMUST00000227660 440 ntBASIC15.81■□□□□ 0.12
Trim56Q80VI1 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Trim56Q80VI1 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Trim56Q80VI1 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim56Q80VI1 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Trim56Q80VI1 Gm44065-201ENSMUST00000203184 3527 ntBASIC15.8■□□□□ 0.12
Trim56Q80VI1 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim56Q80VI1 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Trim56Q80VI1 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim56Q80VI1 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Trim56Q80VI1 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC15.8■□□□□ 0.12
Trim56Q80VI1 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Trim56Q80VI1 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC15.8■□□□□ 0.12
Trim56Q80VI1 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
Trim56Q80VI1 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC15.8■□□□□ 0.12
Trim56Q80VI1 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
Trim56Q80VI1 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC15.8■□□□□ 0.12
Trim56Q80VI1 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC15.8■□□□□ 0.12
Trim56Q80VI1 Cdk7-205ENSMUST00000225990 1159 ntBASIC15.8■□□□□ 0.12
Trim56Q80VI1 AC155237.1-201ENSMUST00000226196 1279 ntBASIC15.8■□□□□ 0.12
Trim56Q80VI1 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Trim56Q80VI1 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms