Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Hmgb4Q6P8W9 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Hmgb4Q6P8W9 Gm9947-201ENSMUST00000067599 2920 ntBASIC14.08□□□□□ -0.15
Hmgb4Q6P8W9 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
Hmgb4Q6P8W9 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Hmgb4Q6P8W9 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Gm13226-201ENSMUST00000117838 404 ntBASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 AC166997.1-201ENSMUST00000225122 572 ntBASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 AC140451.2-201ENSMUST00000228030 664 ntBASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Gm44065-201ENSMUST00000203184 3527 ntBASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Hmgb4Q6P8W9 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Gm15371-201ENSMUST00000117057 784 ntBASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Mup-ps23-201ENSMUST00000118063 630 ntBASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Gm9299-201ENSMUST00000206392 1140 ntBASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Gm7561-201ENSMUST00000211203 886 ntBASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Hmgb4Q6P8W9 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
Hmgb4Q6P8W9 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Hmgb4Q6P8W9 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC14.06□□□□□ -0.16
Hmgb4Q6P8W9 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC14.06□□□□□ -0.16
Hmgb4Q6P8W9 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Hmgb4Q6P8W9 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Hmgb4Q6P8W9 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Hmgb4Q6P8W9 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Hmgb4Q6P8W9 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Hmgb4Q6P8W9 Gm38094-201ENSMUST00000195864 2978 ntBASIC14.06□□□□□ -0.16
Hmgb4Q6P8W9 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Hmgb4Q6P8W9 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Hmgb4Q6P8W9 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Hmgb4Q6P8W9 AC126549.2-201ENSMUST00000223997 1976 ntBASIC14.06□□□□□ -0.16
Hmgb4Q6P8W9 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Hmgb4Q6P8W9 Mir698-201ENSMUST00000102164 109 ntBASIC14.06□□□□□ -0.16
Hmgb4Q6P8W9 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Hmgb4Q6P8W9 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Hmgb4Q6P8W9 Gm45784-201ENSMUST00000188360 142 ntBASIC14.06□□□□□ -0.16
Hmgb4Q6P8W9 AC122459.1-201ENSMUST00000228373 885 ntBASIC14.06□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 58.5 ms