Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim28Q62318 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim28Q62318 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC17.29■□□□□ 0.36
Trim28Q62318 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim28Q62318 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim28Q62318 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim28Q62318 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Trim28Q62318 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC17.29■□□□□ 0.36
Trim28Q62318 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC17.29■□□□□ 0.36
Trim28Q62318 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC17.29■□□□□ 0.36
Trim28Q62318 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC17.29■□□□□ 0.36
Trim28Q62318 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim28Q62318 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC17.29■□□□□ 0.36
Trim28Q62318 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim28Q62318 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim28Q62318 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim28Q62318 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim28Q62318 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim28Q62318 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim28Q62318 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim28Q62318 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim28Q62318 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim28Q62318 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim28Q62318 Gm38157-201ENSMUST00000194178 1698 ntBASIC17.29■□□□□ 0.36
Trim28Q62318 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Trim28Q62318 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim28Q62318 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim28Q62318 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim28Q62318 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim28Q62318 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Trim28Q62318 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim28Q62318 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim28Q62318 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC17.28■□□□□ 0.36
Trim28Q62318 Gm18584-201ENSMUST00000203098 964 ntBASIC17.28■□□□□ 0.36
Trim28Q62318 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC17.28■□□□□ 0.36
Trim28Q62318 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC17.28■□□□□ 0.36
Trim28Q62318 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim28Q62318 AC154262.2-201ENSMUST00000224310 2293 ntBASIC17.28■□□□□ 0.36
Trim28Q62318 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC17.28■□□□□ 0.36
Trim28Q62318 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim28Q62318 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Trim28Q62318 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim28Q62318 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim28Q62318 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim28Q62318 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
Trim28Q62318 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trim28Q62318 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC17.27■□□□□ 0.36
Trim28Q62318 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim28Q62318 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim28Q62318 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trim28Q62318 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC17.27■□□□□ 0.36
Trim28Q62318 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim28Q62318 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim28Q62318 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim28Q62318 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim28Q62318 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trim28Q62318 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Trim28Q62318 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trim28Q62318 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trim28Q62318 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC17.27■□□□□ 0.36
Trim28Q62318 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim28Q62318 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC17.27■□□□□ 0.36
Trim28Q62318 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim28Q62318 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Trim28Q62318 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
Trim28Q62318 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Trim28Q62318 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
Trim28Q62318 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim28Q62318 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim28Q62318 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Trim28Q62318 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Trim28Q62318 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim28Q62318 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC17.27■□□□□ 0.35
Trim28Q62318 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim28Q62318 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC17.27■□□□□ 0.35
Trim28Q62318 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim28Q62318 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Trim28Q62318 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim28Q62318 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trim28Q62318 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Trim28Q62318 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim28Q62318 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim28Q62318 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim28Q62318 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim28Q62318 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC17.26■□□□□ 0.35
Trim28Q62318 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Trim28Q62318 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC17.26■□□□□ 0.35
Trim28Q62318 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim28Q62318 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim28Q62318 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim28Q62318 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC17.26■□□□□ 0.35
Trim28Q62318 Gm9061-201ENSMUST00000182707 1006 ntBASIC17.26■□□□□ 0.35
Trim28Q62318 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC17.26■□□□□ 0.35
Trim28Q62318 Gm29396-201ENSMUST00000185659 716 ntBASIC17.26■□□□□ 0.35
Trim28Q62318 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC17.26■□□□□ 0.35
Trim28Q62318 Gm18935-201ENSMUST00000212692 664 ntBASIC17.26■□□□□ 0.35
Trim28Q62318 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim28Q62318 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Trim28Q62318 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Trim28Q62318 Olfr582-201ENSMUST00000098212 960 ntBASIC17.26■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 107.7 ms