Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col28a1Q2UY11 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col28a1Q2UY11 Gm44414-201ENSMUST00000203660 2109 ntBASIC13.07□□□□□ -0.32
Col28a1Q2UY11 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col28a1Q2UY11 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Col28a1Q2UY11 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col28a1Q2UY11 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Col28a1Q2UY11 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col28a1Q2UY11 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC13.07□□□□□ -0.32
Col28a1Q2UY11 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col28a1Q2UY11 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col28a1Q2UY11 AC117194.1-201ENSMUST00000224847 3002 ntBASIC13.07□□□□□ -0.32
Col28a1Q2UY11 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Col28a1Q2UY11 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col28a1Q2UY11 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC13.07□□□□□ -0.32
Col28a1Q2UY11 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Col28a1Q2UY11 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC13.07□□□□□ -0.32
Col28a1Q2UY11 Gtpbp10-211ENSMUST00000198799 648 ntBASIC13.07□□□□□ -0.32
Col28a1Q2UY11 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Col28a1Q2UY11 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC13.07□□□□□ -0.32
Col28a1Q2UY11 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Col28a1Q2UY11 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col28a1Q2UY11 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col28a1Q2UY11 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Col28a1Q2UY11 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col28a1Q2UY11 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC13.07□□□□□ -0.32
Col28a1Q2UY11 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC13.07□□□□□ -0.32
Col28a1Q2UY11 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col28a1Q2UY11 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC13.07□□□□□ -0.32
Col28a1Q2UY11 Gm5385-201ENSMUST00000118988 1559 ntBASIC13.07□□□□□ -0.32
Col28a1Q2UY11 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col28a1Q2UY11 Gm4782-201ENSMUST00000168705 2046 ntBASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Gm43134-201ENSMUST00000199434 1886 ntBASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Mir7684-201ENSMUST00000183858 60 ntBASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Gm42934-201ENSMUST00000196920 1345 ntBASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 AC159196.2-201ENSMUST00000224082 1622 ntBASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col28a1Q2UY11 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC13.05□□□□□ -0.32
Col28a1Q2UY11 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 50.3 ms