Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Col8a1Q00780 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Col8a1Q00780 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC11.45□□□□□ -0.58
Col8a1Q00780 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC11.45□□□□□ -0.58
Col8a1Q00780 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Col8a1Q00780 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Ncor2-205ENSMUST00000111398 8808 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Col8a1Q00780 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Gm6023-201ENSMUST00000118217 606 ntBASIC11.45□□□□□ -0.58
Col8a1Q00780 Gm11400-201ENSMUST00000120853 1214 ntBASIC11.45□□□□□ -0.58
Col8a1Q00780 Gm14235-201ENSMUST00000142445 366 ntTSL 3 BASIC11.45□□□□□ -0.58
Col8a1Q00780 Gm24990-201ENSMUST00000157406 323 ntBASIC11.45□□□□□ -0.58
Col8a1Q00780 Gm22334-201ENSMUST00000158070 133 ntBASIC11.45□□□□□ -0.58
Col8a1Q00780 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC11.45□□□□□ -0.58
Col8a1Q00780 Gm26927-201ENSMUST00000182385 965 ntBASIC11.45□□□□□ -0.58
Col8a1Q00780 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC11.45□□□□□ -0.58
Col8a1Q00780 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC11.45□□□□□ -0.58
Col8a1Q00780 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Col8a1Q00780 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Col8a1Q00780 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Gm42632-201ENSMUST00000201707 2411 ntBASIC11.45□□□□□ -0.58
Col8a1Q00780 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col8a1Q00780 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC11.45□□□□□ -0.58
Col8a1Q00780 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC11.44□□□□□ -0.58
Col8a1Q00780 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC11.44□□□□□ -0.58
Col8a1Q00780 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC11.44□□□□□ -0.58
Col8a1Q00780 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
Col8a1Q00780 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC11.44□□□□□ -0.58
Col8a1Q00780 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Col8a1Q00780 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Col8a1Q00780 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC11.44□□□□□ -0.58
Col8a1Q00780 Gm5687-201ENSMUST00000118252 640 ntBASIC11.44□□□□□ -0.58
Col8a1Q00780 Dusp13-204ENSMUST00000120984 976 ntAPPRIS ALT1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Col8a1Q00780 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC11.44□□□□□ -0.58
Col8a1Q00780 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Gm29608-201ENSMUST00000190444 463 ntBASIC11.44□□□□□ -0.58
Col8a1Q00780 Gm42929-201ENSMUST00000198374 1286 ntBASIC11.44□□□□□ -0.58
Col8a1Q00780 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC11.44□□□□□ -0.58
Col8a1Q00780 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC11.44□□□□□ -0.58
Col8a1Q00780 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC11.44□□□□□ -0.58
Col8a1Q00780 Gm4935-201ENSMUST00000221316 1198 ntBASIC11.44□□□□□ -0.58
Col8a1Q00780 Gm29787-201ENSMUST00000222129 849 ntBASIC11.44□□□□□ -0.58
Col8a1Q00780 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC11.44□□□□□ -0.58
Col8a1Q00780 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Col8a1Q00780 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Col8a1Q00780 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms