Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Sox3P53784 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sox3P53784 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Sox3P53784 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Sox3P53784 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Sox3P53784 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Sox3P53784 AL645783.1-201ENSMUST00000221416 1832 ntBASIC12.9□□□□□ -0.34
Sox3P53784 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC12.9□□□□□ -0.34
Sox3P53784 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sox3P53784 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC12.9□□□□□ -0.34
Sox3P53784 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sox3P53784 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Sox3P53784 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC12.89□□□□□ -0.35
Sox3P53784 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sox3P53784 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
Sox3P53784 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sox3P53784 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sox3P53784 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sox3P53784 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sox3P53784 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sox3P53784 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sox3P53784 Dctn4-202ENSMUST00000223590 1530 ntBASIC12.89□□□□□ -0.35
Sox3P53784 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sox3P53784 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sox3P53784 Gm12384-201ENSMUST00000119228 919 ntBASIC12.89□□□□□ -0.35
Sox3P53784 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sox3P53784 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sox3P53784 Gm8565-201ENSMUST00000183259 1014 ntBASIC12.89□□□□□ -0.35
Sox3P53784 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC12.89□□□□□ -0.35
Sox3P53784 Gm18934-201ENSMUST00000216671 1044 ntBASIC12.89□□□□□ -0.35
Sox3P53784 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sox3P53784 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
Sox3P53784 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sox3P53784 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sox3P53784 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sox3P53784 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sox3P53784 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sox3P53784 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sox3P53784 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Sox3P53784 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sox3P53784 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sox3P53784 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sox3P53784 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
Sox3P53784 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sox3P53784 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sox3P53784 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sox3P53784 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sox3P53784 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC12.88□□□□□ -0.35
Sox3P53784 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC12.88□□□□□ -0.35
Sox3P53784 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Sox3P53784 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC12.88□□□□□ -0.35
Sox3P53784 Gm8584-201ENSMUST00000171982 758 ntBASIC12.88□□□□□ -0.35
Sox3P53784 Gm4691-201ENSMUST00000182339 1000 ntBASIC12.88□□□□□ -0.35
Sox3P53784 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC12.88□□□□□ -0.35
Sox3P53784 Gm2451-201ENSMUST00000199447 999 ntBASIC12.88□□□□□ -0.35
Sox3P53784 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Sox3P53784 Gm10290-201ENSMUST00000200451 999 ntBASIC12.88□□□□□ -0.35
Sox3P53784 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC12.88□□□□□ -0.35
Sox3P53784 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC12.88□□□□□ -0.35
Sox3P53784 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sox3P53784 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sox3P53784 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Sox3P53784 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sox3P53784 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Sox3P53784 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Sox3P53784 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sox3P53784 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sox3P53784 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sox3P53784 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sox3P53784 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Sox3P53784 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
Sox3P53784 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sox3P53784 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC12.88□□□□□ -0.35
Sox3P53784 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC12.88□□□□□ -0.35
Sox3P53784 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sox3P53784 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sox3P53784 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Sox3P53784 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sox3P53784 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sox3P53784 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sox3P53784 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sox3P53784 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sox3P53784 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sox3P53784 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sox3P53784 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sox3P53784 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sox3P53784 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Sox3P53784 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sox3P53784 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Sox3P53784 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC12.87□□□□□ -0.35
Sox3P53784 Mir8109-201ENSMUST00000184375 117 ntBASIC12.87□□□□□ -0.35
Sox3P53784 Gm29199-201ENSMUST00000187766 775 ntBASIC12.87□□□□□ -0.35
Sox3P53784 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Sox3P53784 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC12.87□□□□□ -0.35
Sox3P53784 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Sox3P53784 Gm3961-201ENSMUST00000204425 994 ntBASIC12.87□□□□□ -0.35
Sox3P53784 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Sox3P53784 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Sox3P53784 Gm24526-201ENSMUST00000082921 158 ntBASIC12.87□□□□□ -0.35
Sox3P53784 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms