Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gm15459-201ENSMUST00000117405 1941 ntBASIC14.54□□□□□ -0.08
RaraP11416 Gm8355-201ENSMUST00000177767 1941 ntBASIC14.54□□□□□ -0.08
RaraP11416 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
RaraP11416 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
RaraP11416 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
RaraP11416 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.08
RaraP11416 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
RaraP11416 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC14.54□□□□□ -0.08
RaraP11416 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
RaraP11416 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC14.54□□□□□ -0.08
RaraP11416 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RaraP11416 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
RaraP11416 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC14.54□□□□□ -0.08
RaraP11416 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
RaraP11416 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RaraP11416 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
RaraP11416 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RaraP11416 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
RaraP11416 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RaraP11416 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
RaraP11416 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
RaraP11416 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
RaraP11416 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
RaraP11416 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RaraP11416 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RaraP11416 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
RaraP11416 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RaraP11416 AC153366.2-201ENSMUST00000219461 1984 ntBASIC14.54□□□□□ -0.08
RaraP11416 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RaraP11416 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
RaraP11416 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RaraP11416 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RaraP11416 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
RaraP11416 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
RaraP11416 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RaraP11416 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RaraP11416 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RaraP11416 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RaraP11416 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
RaraP11416 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RaraP11416 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RaraP11416 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
RaraP11416 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RaraP11416 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC14.53□□□□□ -0.08
RaraP11416 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RaraP11416 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC14.53□□□□□ -0.08
RaraP11416 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC14.53□□□□□ -0.08
RaraP11416 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RaraP11416 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
RaraP11416 Gm38037-201ENSMUST00000192600 1624 ntBASIC14.53□□□□□ -0.08
RaraP11416 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RaraP11416 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
RaraP11416 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC14.53□□□□□ -0.08
RaraP11416 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RaraP11416 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RaraP11416 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC14.53□□□□□ -0.08
RaraP11416 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC14.53□□□□□ -0.08
RaraP11416 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RaraP11416 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RaraP11416 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC14.53□□□□□ -0.08
RaraP11416 AC139382.1-201ENSMUST00000221402 498 ntBASIC14.53□□□□□ -0.08
RaraP11416 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RaraP11416 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
RaraP11416 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RaraP11416 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
RaraP11416 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
RaraP11416 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RaraP11416 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RaraP11416 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RaraP11416 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
RaraP11416 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
RaraP11416 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
RaraP11416 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
RaraP11416 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.08
RaraP11416 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
RaraP11416 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
RaraP11416 Gm5385-201ENSMUST00000118988 1559 ntBASIC14.52□□□□□ -0.08
RaraP11416 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
RaraP11416 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
RaraP11416 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
RaraP11416 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
RaraP11416 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
RaraP11416 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC14.52□□□□□ -0.09
RaraP11416 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC14.52□□□□□ -0.09
RaraP11416 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
RaraP11416 Gm14730-201ENSMUST00000122378 1045 ntBASIC14.52□□□□□ -0.09
RaraP11416 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC14.52□□□□□ -0.09
RaraP11416 Gm37171-201ENSMUST00000192636 1185 ntBASIC14.52□□□□□ -0.09
RaraP11416 Gm7498-201ENSMUST00000203282 1084 ntBASIC14.52□□□□□ -0.09
RaraP11416 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC14.52□□□□□ -0.09
RaraP11416 Gm17795-201ENSMUST00000214505 757 ntBASIC14.52□□□□□ -0.09
RaraP11416 mt-Rnr1-201ENSMUST00000082388 955 ntBASIC14.52□□□□□ -0.09
RaraP11416 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
RaraP11416 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
RaraP11416 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
RaraP11416 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
RaraP11416 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
RaraP11416 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
RaraP11416 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
RaraP11416 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms