Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col5a1O88207 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col5a1O88207 Gm4993-201ENSMUST00000118719 1174 ntBASIC11.95□□□□□ -0.5
Col5a1O88207 Gm12539-201ENSMUST00000121549 1098 ntBASIC11.95□□□□□ -0.5
Col5a1O88207 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC11.95□□□□□ -0.5
Col5a1O88207 AC069562.3-201ENSMUST00000225387 587 ntBASIC11.95□□□□□ -0.5
Col5a1O88207 CT025533.2-201ENSMUST00000228715 1248 ntBASIC11.95□□□□□ -0.5
Col5a1O88207 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col5a1O88207 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col5a1O88207 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col5a1O88207 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col5a1O88207 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC11.95□□□□□ -0.5
Col5a1O88207 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col5a1O88207 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Col5a1O88207 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Col5a1O88207 AC154262.2-201ENSMUST00000224310 2293 ntBASIC11.95□□□□□ -0.5
Col5a1O88207 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col5a1O88207 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col5a1O88207 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col5a1O88207 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col5a1O88207 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col5a1O88207 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col5a1O88207 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col5a1O88207 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col5a1O88207 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col5a1O88207 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Col5a1O88207 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Col5a1O88207 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Col5a1O88207 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col5a1O88207 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC11.94□□□□□ -0.5
Col5a1O88207 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col5a1O88207 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col5a1O88207 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Col5a1O88207 Gm44967-201ENSMUST00000207047 631 ntBASIC11.94□□□□□ -0.5
Col5a1O88207 AC122876.1-201ENSMUST00000217619 825 ntBASIC11.94□□□□□ -0.5
Col5a1O88207 Gm32025-201ENSMUST00000217960 307 ntBASIC11.94□□□□□ -0.5
Col5a1O88207 Gm19163-201ENSMUST00000223313 780 ntBASIC11.94□□□□□ -0.5
Col5a1O88207 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col5a1O88207 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col5a1O88207 Gm5846-201ENSMUST00000193146 1414 ntBASIC11.94□□□□□ -0.5
Col5a1O88207 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC11.94□□□□□ -0.5
Col5a1O88207 AC139054.1-201ENSMUST00000226898 1598 ntBASIC11.94□□□□□ -0.5
Col5a1O88207 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col5a1O88207 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Col5a1O88207 Gm5466-201ENSMUST00000119395 1890 ntBASIC11.94□□□□□ -0.5
Col5a1O88207 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Col5a1O88207 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col5a1O88207 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col5a1O88207 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col5a1O88207 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col5a1O88207 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col5a1O88207 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col5a1O88207 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC11.93□□□□□ -0.5
Col5a1O88207 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC11.93□□□□□ -0.5
Col5a1O88207 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Gm23270-201ENSMUST00000104055 131 ntBASIC11.93□□□□□ -0.5
Col5a1O88207 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC11.93□□□□□ -0.5
Col5a1O88207 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC11.93□□□□□ -0.5
Col5a1O88207 Gm16740-201ENSMUST00000181819 956 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC11.93□□□□□ -0.5
Col5a1O88207 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Col5a1O88207 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Col5a1O88207 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Col5a1O88207 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Prdx1-202ENSMUST00000106470 877 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Col5a1O88207 Higd1c-201ENSMUST00000175683 507 ntAPPRIS P1 TSL 3 BASIC11.93□□□□□ -0.5
Col5a1O88207 Gm8176-201ENSMUST00000191297 1099 ntBASIC11.93□□□□□ -0.5
Col5a1O88207 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC11.93□□□□□ -0.5
Col5a1O88207 Gm45219-201ENSMUST00000205602 465 ntBASIC11.93□□□□□ -0.5
Col5a1O88207 Gm44772-201ENSMUST00000207623 1191 ntBASIC11.93□□□□□ -0.5
Col5a1O88207 Gm8285-201ENSMUST00000208293 759 ntBASIC11.93□□□□□ -0.5
Col5a1O88207 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC11.93□□□□□ -0.5
Col5a1O88207 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC11.93□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 67.3 ms