Protein–RNA interactions for Protein: O35188

Cx3cl1, Fractalkine, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cx3cl1O35188 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.39
Cx3cl1O35188 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Gm9115-201ENSMUST00000120192 1348 ntBASIC12.64□□□□□ -0.39
Cx3cl1O35188 Gm37133-201ENSMUST00000192705 1922 ntBASIC12.64□□□□□ -0.39
Cx3cl1O35188 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC12.64□□□□□ -0.39
Cx3cl1O35188 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Gm42829-201ENSMUST00000198417 2585 ntBASIC12.64□□□□□ -0.39
Cx3cl1O35188 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC12.64□□□□□ -0.39
Cx3cl1O35188 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Gm9794-201ENSMUST00000202370 423 ntBASIC12.64□□□□□ -0.39
Cx3cl1O35188 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Gm9908-201ENSMUST00000211534 448 ntBASIC12.64□□□□□ -0.39
Cx3cl1O35188 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Cx3cl1O35188 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Gm43364-201ENSMUST00000196046 3274 ntBASIC12.63□□□□□ -0.39
Cx3cl1O35188 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Gm12416-201ENSMUST00000120911 1008 ntBASIC12.63□□□□□ -0.39
Cx3cl1O35188 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Gm17330-201ENSMUST00000221047 165 ntBASIC12.63□□□□□ -0.39
Cx3cl1O35188 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Gm12626-201ENSMUST00000117339 1983 ntBASIC12.63□□□□□ -0.39
Cx3cl1O35188 Gm12623-201ENSMUST00000119849 1983 ntBASIC12.63□□□□□ -0.39
Cx3cl1O35188 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Cx3cl1O35188 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cx3cl1O35188 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cx3cl1O35188 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cx3cl1O35188 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms