Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chd3B1AR17 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC13.14□□□□□ -0.31
Chd3B1AR17 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Chd3B1AR17 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chd3B1AR17 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chd3B1AR17 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chd3B1AR17 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Chd3B1AR17 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC13.13□□□□□ -0.31
Chd3B1AR17 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chd3B1AR17 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chd3B1AR17 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chd3B1AR17 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chd3B1AR17 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chd3B1AR17 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC13.13□□□□□ -0.31
Chd3B1AR17 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chd3B1AR17 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chd3B1AR17 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chd3B1AR17 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chd3B1AR17 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chd3B1AR17 Gm5687-201ENSMUST00000118252 640 ntBASIC13.13□□□□□ -0.31
Chd3B1AR17 Gm13369-201ENSMUST00000119442 987 ntBASIC13.13□□□□□ -0.31
Chd3B1AR17 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC13.13□□□□□ -0.31
Chd3B1AR17 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chd3B1AR17 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC13.13□□□□□ -0.31
Chd3B1AR17 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Chd3B1AR17 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC13.13□□□□□ -0.31
Chd3B1AR17 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chd3B1AR17 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Chd3B1AR17 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chd3B1AR17 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chd3B1AR17 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chd3B1AR17 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chd3B1AR17 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chd3B1AR17 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chd3B1AR17 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chd3B1AR17 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chd3B1AR17 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Chd3B1AR17 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC13.13□□□□□ -0.31
Chd3B1AR17 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chd3B1AR17 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chd3B1AR17 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC13.13□□□□□ -0.31
Chd3B1AR17 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC13.13□□□□□ -0.31
Chd3B1AR17 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC13.13□□□□□ -0.31
Chd3B1AR17 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Chd3B1AR17 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Chd3B1AR17 Gm14723-201ENSMUST00000118686 215 ntBASIC13.12□□□□□ -0.31
Chd3B1AR17 Gm6447-201ENSMUST00000118905 835 ntBASIC13.12□□□□□ -0.31
Chd3B1AR17 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC13.12□□□□□ -0.31
Chd3B1AR17 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC13.12□□□□□ -0.31
Chd3B1AR17 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC13.12□□□□□ -0.31
Chd3B1AR17 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chd3B1AR17 Gm3695-201ENSMUST00000087222 1009 ntBASIC13.12□□□□□ -0.31
Chd3B1AR17 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chd3B1AR17 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chd3B1AR17 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC13.12□□□□□ -0.31
Chd3B1AR17 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
Chd3B1AR17 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chd3B1AR17 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chd3B1AR17 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC13.12□□□□□ -0.31
Chd3B1AR17 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Chd3B1AR17 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chd3B1AR17 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chd3B1AR17 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Chd3B1AR17 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Chd3B1AR17 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chd3B1AR17 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chd3B1AR17 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Chd3B1AR17 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chd3B1AR17 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chd3B1AR17 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chd3B1AR17 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Chd3B1AR17 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chd3B1AR17 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Chd3B1AR17 Gm16202-201ENSMUST00000117532 544 ntBASIC13.12□□□□□ -0.31
Chd3B1AR17 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC13.12□□□□□ -0.31
Chd3B1AR17 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Chd3B1AR17 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC13.12□□□□□ -0.31
Chd3B1AR17 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC13.12□□□□□ -0.31
Chd3B1AR17 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC13.12□□□□□ -0.31
Chd3B1AR17 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chd3B1AR17 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Chd3B1AR17 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chd3B1AR17 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Chd3B1AR17 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chd3B1AR17 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chd3B1AR17 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC13.12□□□□□ -0.31
Chd3B1AR17 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chd3B1AR17 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC13.12□□□□□ -0.31
Chd3B1AR17 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Chd3B1AR17 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Chd3B1AR17 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Chd3B1AR17 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Chd3B1AR17 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Chd3B1AR17 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Chd3B1AR17 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC13.11□□□□□ -0.31
Chd3B1AR17 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Chd3B1AR17 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Chd3B1AR17 Gm6023-201ENSMUST00000118217 606 ntBASIC13.11□□□□□ -0.31
Chd3B1AR17 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
Chd3B1AR17 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms