Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC26.09■■□□□ 1.77
Scn11aQ9R053 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Scn11aQ9R053 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Scn11aQ9R053 Slc35b2-207ENSMUST00000226086 850 ntBASIC26.09■■□□□ 1.77
Scn11aQ9R053 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
Scn11aQ9R053 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC26.08■■□□□ 1.77
Scn11aQ9R053 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Scn11aQ9R053 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Scn11aQ9R053 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
Scn11aQ9R053 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC26.07■■□□□ 1.76
Scn11aQ9R053 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC26.07■■□□□ 1.76
Scn11aQ9R053 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
Scn11aQ9R053 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Scn11aQ9R053 Gm13241-201ENSMUST00000094493 780 ntBASIC26.07■■□□□ 1.76
Scn11aQ9R053 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
Scn11aQ9R053 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Scn11aQ9R053 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC26.05■■□□□ 1.76
Scn11aQ9R053 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
Scn11aQ9R053 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Scn11aQ9R053 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Scn11aQ9R053 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Scn11aQ9R053 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
Scn11aQ9R053 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
Scn11aQ9R053 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC26.03■■□□□ 1.76
Scn11aQ9R053 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
Scn11aQ9R053 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC26.03■■□□□ 1.76
Scn11aQ9R053 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Scn11aQ9R053 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC26.02■■□□□ 1.76
Scn11aQ9R053 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC26.02■■□□□ 1.76
Scn11aQ9R053 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
Scn11aQ9R053 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC26.02■■□□□ 1.76
Scn11aQ9R053 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC26.02■■□□□ 1.76
Scn11aQ9R053 Gm10399-202ENSMUST00000202768 748 ntBASIC26.02■■□□□ 1.76
Scn11aQ9R053 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC26.02■■□□□ 1.76
Scn11aQ9R053 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC26.01■■□□□ 1.76
Scn11aQ9R053 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC26.01■■□□□ 1.75
Scn11aQ9R053 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC26.01■■□□□ 1.75
Scn11aQ9R053 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Scn11aQ9R053 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Scn11aQ9R053 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Scn11aQ9R053 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC26■■□□□ 1.75
Scn11aQ9R053 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC26■■□□□ 1.75
Scn11aQ9R053 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC26■■□□□ 1.75
Scn11aQ9R053 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC26■■□□□ 1.75
Scn11aQ9R053 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Scn11aQ9R053 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC26■■□□□ 1.75
Scn11aQ9R053 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC26■■□□□ 1.75
Scn11aQ9R053 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC26■■□□□ 1.75
Scn11aQ9R053 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
Scn11aQ9R053 Etf1-202ENSMUST00000180351 108 ntBASIC25.99■■□□□ 1.75
Scn11aQ9R053 Gm40881-201ENSMUST00000223397 166 ntBASIC25.99■■□□□ 1.75
Scn11aQ9R053 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Scn11aQ9R053 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC25.99■■□□□ 1.75
Scn11aQ9R053 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC25.98■■□□□ 1.75
Scn11aQ9R053 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
Scn11aQ9R053 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
Scn11aQ9R053 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
Scn11aQ9R053 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC25.97■■□□□ 1.75
Scn11aQ9R053 Gm43034-201ENSMUST00000198678 1364 ntBASIC25.97■■□□□ 1.75
Scn11aQ9R053 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
Scn11aQ9R053 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC25.97■■□□□ 1.75
Scn11aQ9R053 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC25.97■■□□□ 1.75
Scn11aQ9R053 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
Scn11aQ9R053 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC25.96■■□□□ 1.75
Scn11aQ9R053 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC25.96■■□□□ 1.75
Scn11aQ9R053 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
Scn11aQ9R053 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC25.96■■□□□ 1.75
Scn11aQ9R053 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC25.96■■□□□ 1.75
Scn11aQ9R053 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC25.95■■□□□ 1.74
Scn11aQ9R053 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Scn11aQ9R053 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC25.95■■□□□ 1.74
Scn11aQ9R053 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
Scn11aQ9R053 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Scn11aQ9R053 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Scn11aQ9R053 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC25.94■■□□□ 1.74
Scn11aQ9R053 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC25.94■■□□□ 1.74
Scn11aQ9R053 Gm22238-201ENSMUST00000175222 88 ntBASIC25.94■■□□□ 1.74
Scn11aQ9R053 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Scn11aQ9R053 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Scn11aQ9R053 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
Scn11aQ9R053 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Scn11aQ9R053 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Scn11aQ9R053 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC25.93■■□□□ 1.74
Scn11aQ9R053 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Scn11aQ9R053 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC25.93■■□□□ 1.74
Scn11aQ9R053 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Scn11aQ9R053 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
Scn11aQ9R053 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC25.92■■□□□ 1.74
Scn11aQ9R053 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC25.92■■□□□ 1.74
Scn11aQ9R053 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC25.92■■□□□ 1.74
Scn11aQ9R053 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC25.92■■□□□ 1.74
Scn11aQ9R053 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Scn11aQ9R053 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Scn11aQ9R053 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Scn11aQ9R053 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC25.91■■□□□ 1.74
Scn11aQ9R053 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
Scn11aQ9R053 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC25.91■■□□□ 1.74
Scn11aQ9R053 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Scn11aQ9R053 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Scn11aQ9R053 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC25.91■■□□□ 1.74
Retrieved 100 of 76,532 protein–RNA pairs in 15.7 ms