Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Ushbp1Q8R370 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC24.04■■□□□ 1.44
Ushbp1Q8R370 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Ushbp1Q8R370 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC24.04■■□□□ 1.44
Ushbp1Q8R370 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC24.04■■□□□ 1.44
Ushbp1Q8R370 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC24.04■■□□□ 1.44
Ushbp1Q8R370 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Ushbp1Q8R370 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Ushbp1Q8R370 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC24.04■■□□□ 1.44
Ushbp1Q8R370 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC24.03■■□□□ 1.44
Ushbp1Q8R370 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC24.03■■□□□ 1.44
Ushbp1Q8R370 Gm26766-202ENSMUST00000227544 2347 ntBASIC24.03■■□□□ 1.44
Ushbp1Q8R370 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
Ushbp1Q8R370 AC153962.1-201ENSMUST00000218530 1948 ntBASIC24.03■■□□□ 1.44
Ushbp1Q8R370 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
Ushbp1Q8R370 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
Ushbp1Q8R370 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
Ushbp1Q8R370 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Ushbp1Q8R370 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Ushbp1Q8R370 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC24.02■■□□□ 1.44
Ushbp1Q8R370 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Ushbp1Q8R370 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Ushbp1Q8R370 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Ushbp1Q8R370 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Ushbp1Q8R370 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Ushbp1Q8R370 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Ushbp1Q8R370 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Ushbp1Q8R370 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC24.01■■□□□ 1.43
Ushbp1Q8R370 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC24.01■■□□□ 1.43
Ushbp1Q8R370 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC24.01■■□□□ 1.43
Ushbp1Q8R370 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Ushbp1Q8R370 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC24.01■■□□□ 1.43
Ushbp1Q8R370 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC24■■□□□ 1.43
Ushbp1Q8R370 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC24■■□□□ 1.43
Ushbp1Q8R370 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Ushbp1Q8R370 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Ushbp1Q8R370 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Ushbp1Q8R370 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC24■■□□□ 1.43
Ushbp1Q8R370 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC24■■□□□ 1.43
Ushbp1Q8R370 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC24■■□□□ 1.43
Ushbp1Q8R370 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Ushbp1Q8R370 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Ushbp1Q8R370 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC23.99■■□□□ 1.43
Ushbp1Q8R370 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Ushbp1Q8R370 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Ushbp1Q8R370 Gm14117-201ENSMUST00000122417 843 ntBASIC23.99■■□□□ 1.43
Ushbp1Q8R370 Gm45102-201ENSMUST00000207427 857 ntBASIC23.99■■□□□ 1.43
Ushbp1Q8R370 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
Ushbp1Q8R370 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Ushbp1Q8R370 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC23.98■■□□□ 1.43
Ushbp1Q8R370 Gm45444-201ENSMUST00000211394 898 ntBASIC23.98■■□□□ 1.43
Ushbp1Q8R370 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Ushbp1Q8R370 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Ushbp1Q8R370 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
Ushbp1Q8R370 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Ushbp1Q8R370 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Ushbp1Q8R370 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
Ushbp1Q8R370 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
Ushbp1Q8R370 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Ushbp1Q8R370 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Ushbp1Q8R370 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Ushbp1Q8R370 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Ushbp1Q8R370 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC23.96■■□□□ 1.43
Ushbp1Q8R370 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Ushbp1Q8R370 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Ushbp1Q8R370 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Ushbp1Q8R370 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
Ushbp1Q8R370 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Ushbp1Q8R370 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC23.96■■□□□ 1.43
Ushbp1Q8R370 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
Ushbp1Q8R370 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
Ushbp1Q8R370 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
Ushbp1Q8R370 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
Ushbp1Q8R370 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
Ushbp1Q8R370 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Ushbp1Q8R370 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Ushbp1Q8R370 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC23.95■■□□□ 1.42
Ushbp1Q8R370 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC23.94■■□□□ 1.42
Ushbp1Q8R370 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Ushbp1Q8R370 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Ushbp1Q8R370 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Ushbp1Q8R370 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Ushbp1Q8R370 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Ushbp1Q8R370 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Ushbp1Q8R370 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
Ushbp1Q8R370 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Ushbp1Q8R370 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Ushbp1Q8R370 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Ushbp1Q8R370 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC23.93■■□□□ 1.42
Ushbp1Q8R370 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Ushbp1Q8R370 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Ushbp1Q8R370 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Ushbp1Q8R370 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Ushbp1Q8R370 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Ushbp1Q8R370 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Ushbp1Q8R370 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Ushbp1Q8R370 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Ushbp1Q8R370 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Ushbp1Q8R370 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Ushbp1Q8R370 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Retrieved 100 of 76,532 protein–RNA pairs in 48.6 ms