Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usf1Q61069 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC19.72■□□□□ 0.75
Usf1Q61069 Flvcr1-202ENSMUST00000191946 1216 ntBASIC19.72■□□□□ 0.75
Usf1Q61069 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usf1Q61069 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Usf1Q61069 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usf1Q61069 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usf1Q61069 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usf1Q61069 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC19.71■□□□□ 0.75
Usf1Q61069 Slc35b2-207ENSMUST00000226086 850 ntBASIC19.71■□□□□ 0.75
Usf1Q61069 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Usf1Q61069 AC117245.4-201ENSMUST00000217388 1646 ntBASIC19.71■□□□□ 0.75
Usf1Q61069 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usf1Q61069 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Usf1Q61069 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usf1Q61069 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC19.7■□□□□ 0.74
Usf1Q61069 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usf1Q61069 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC19.69■□□□□ 0.74
Usf1Q61069 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usf1Q61069 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC19.69■□□□□ 0.74
Usf1Q61069 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usf1Q61069 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usf1Q61069 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usf1Q61069 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usf1Q61069 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC19.68■□□□□ 0.74
Usf1Q61069 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Usf1Q61069 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usf1Q61069 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usf1Q61069 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usf1Q61069 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC19.67■□□□□ 0.74
Usf1Q61069 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
Usf1Q61069 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Usf1Q61069 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usf1Q61069 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Usf1Q61069 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC19.67■□□□□ 0.74
Usf1Q61069 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usf1Q61069 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usf1Q61069 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usf1Q61069 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Usf1Q61069 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC19.66■□□□□ 0.74
Usf1Q61069 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usf1Q61069 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usf1Q61069 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usf1Q61069 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usf1Q61069 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Usf1Q61069 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Usf1Q61069 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC19.65■□□□□ 0.74
Usf1Q61069 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Usf1Q61069 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Usf1Q61069 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Usf1Q61069 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Usf1Q61069 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Usf1Q61069 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Usf1Q61069 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Usf1Q61069 Gm10620-201ENSMUST00000098379 1332 ntBASIC19.64■□□□□ 0.73
Usf1Q61069 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Usf1Q61069 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC19.64■□□□□ 0.73
Usf1Q61069 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Usf1Q61069 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usf1Q61069 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usf1Q61069 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usf1Q61069 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC19.63■□□□□ 0.73
Usf1Q61069 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usf1Q61069 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usf1Q61069 Gm8495-201ENSMUST00000188740 694 ntBASIC19.63■□□□□ 0.73
Usf1Q61069 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usf1Q61069 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usf1Q61069 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usf1Q61069 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
Usf1Q61069 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Usf1Q61069 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Usf1Q61069 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Usf1Q61069 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Usf1Q61069 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Usf1Q61069 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC19.61■□□□□ 0.73
Usf1Q61069 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Usf1Q61069 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usf1Q61069 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usf1Q61069 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Usf1Q61069 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC19.6■□□□□ 0.73
Usf1Q61069 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC19.6■□□□□ 0.73
Usf1Q61069 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
Usf1Q61069 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Usf1Q61069 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Usf1Q61069 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usf1Q61069 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usf1Q61069 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Usf1Q61069 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Usf1Q61069 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usf1Q61069 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usf1Q61069 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Usf1Q61069 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usf1Q61069 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC19.58■□□□□ 0.73
Usf1Q61069 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Usf1Q61069 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Usf1Q61069 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Usf1Q61069 Gm9207-201ENSMUST00000198773 1115 ntBASIC19.58■□□□□ 0.72
Usf1Q61069 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Usf1Q61069 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC19.58■□□□□ 0.72
Usf1Q61069 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms