Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC25.21■■□□□ 1.63
Limch1Q3UH68 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Limch1Q3UH68 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC25.21■■□□□ 1.63
Limch1Q3UH68 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC25.21■■□□□ 1.63
Limch1Q3UH68 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC25.21■■□□□ 1.63
Limch1Q3UH68 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC25.2■■□□□ 1.63
Limch1Q3UH68 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
Limch1Q3UH68 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Limch1Q3UH68 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC25.2■■□□□ 1.62
Limch1Q3UH68 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC25.2■■□□□ 1.62
Limch1Q3UH68 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC25.2■■□□□ 1.62
Limch1Q3UH68 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Limch1Q3UH68 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC25.19■■□□□ 1.62
Limch1Q3UH68 Nsd1-203ENSMUST00000224156 1149 ntBASIC25.19■■□□□ 1.62
Limch1Q3UH68 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Limch1Q3UH68 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Limch1Q3UH68 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
Limch1Q3UH68 Gm13238-201ENSMUST00000117655 780 ntBASIC25.18■■□□□ 1.62
Limch1Q3UH68 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
Limch1Q3UH68 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
Limch1Q3UH68 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC25.17■■□□□ 1.62
Limch1Q3UH68 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Limch1Q3UH68 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC25.17■■□□□ 1.62
Limch1Q3UH68 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Limch1Q3UH68 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC25.17■■□□□ 1.62
Limch1Q3UH68 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
Limch1Q3UH68 Gm43566-201ENSMUST00000196851 808 ntBASIC25.17■■□□□ 1.62
Limch1Q3UH68 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC25.17■■□□□ 1.62
Limch1Q3UH68 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC25.17■■□□□ 1.62
Limch1Q3UH68 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
Limch1Q3UH68 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Limch1Q3UH68 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC25.16■■□□□ 1.62
Limch1Q3UH68 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
Limch1Q3UH68 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
Limch1Q3UH68 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Limch1Q3UH68 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Limch1Q3UH68 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Limch1Q3UH68 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
Limch1Q3UH68 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Limch1Q3UH68 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Limch1Q3UH68 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
Limch1Q3UH68 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
Limch1Q3UH68 Gm15039-201ENSMUST00000118914 875 ntBASIC25.15■■□□□ 1.62
Limch1Q3UH68 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC25.15■■□□□ 1.62
Limch1Q3UH68 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Limch1Q3UH68 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Limch1Q3UH68 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Limch1Q3UH68 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Limch1Q3UH68 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
Limch1Q3UH68 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
Limch1Q3UH68 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Limch1Q3UH68 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
Limch1Q3UH68 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.62
Limch1Q3UH68 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Limch1Q3UH68 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC25.14■■□□□ 1.62
Limch1Q3UH68 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC25.14■■□□□ 1.62
Limch1Q3UH68 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Limch1Q3UH68 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.61
Limch1Q3UH68 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
Limch1Q3UH68 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
Limch1Q3UH68 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
Limch1Q3UH68 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
Limch1Q3UH68 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC25.13■■□□□ 1.61
Limch1Q3UH68 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC25.13■■□□□ 1.61
Limch1Q3UH68 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC25.13■■□□□ 1.61
Limch1Q3UH68 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Limch1Q3UH68 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Limch1Q3UH68 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC25.13■■□□□ 1.61
Limch1Q3UH68 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
Limch1Q3UH68 Dmtn-209ENSMUST00000228295 2572 ntBASIC25.12■■□□□ 1.61
Limch1Q3UH68 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Limch1Q3UH68 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC25.12■■□□□ 1.61
Limch1Q3UH68 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC25.12■■□□□ 1.61
Limch1Q3UH68 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC25.12■■□□□ 1.61
Limch1Q3UH68 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
Limch1Q3UH68 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC25.11■■□□□ 1.61
Limch1Q3UH68 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Limch1Q3UH68 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
Limch1Q3UH68 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC25.11■■□□□ 1.61
Limch1Q3UH68 Gm45444-201ENSMUST00000211394 898 ntBASIC25.11■■□□□ 1.61
Limch1Q3UH68 AC093043.1-201ENSMUST00000226700 898 ntBASIC25.11■■□□□ 1.61
Limch1Q3UH68 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC25.11■■□□□ 1.61
Limch1Q3UH68 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC25.11■■□□□ 1.61
Limch1Q3UH68 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Limch1Q3UH68 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Limch1Q3UH68 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
Limch1Q3UH68 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC25.1■■□□□ 1.61
Limch1Q3UH68 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Limch1Q3UH68 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC25.1■■□□□ 1.61
Limch1Q3UH68 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC25.1■■□□□ 1.61
Limch1Q3UH68 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
Limch1Q3UH68 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
Limch1Q3UH68 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Limch1Q3UH68 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC25.09■■□□□ 1.61
Limch1Q3UH68 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Limch1Q3UH68 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC25.08■■□□□ 1.61
Limch1Q3UH68 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC25.08■■□□□ 1.61
Limch1Q3UH68 Gm15820-201ENSMUST00000201566 728 ntBASIC25.08■■□□□ 1.61
Limch1Q3UH68 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
Limch1Q3UH68 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Retrieved 100 of 76,532 protein–RNA pairs in 48.7 ms