Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC20.27■□□□□ 0.84
Msx1P13297 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Msx1P13297 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Msx1P13297 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC20.27■□□□□ 0.84
Msx1P13297 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Msx1P13297 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC20.27■□□□□ 0.83
Msx1P13297 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Msx1P13297 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Msx1P13297 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Msx1P13297 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Msx1P13297 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Msx1P13297 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
Msx1P13297 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC20.25■□□□□ 0.83
Msx1P13297 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Msx1P13297 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Msx1P13297 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Msx1P13297 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Msx1P13297 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Msx1P13297 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Msx1P13297 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC20.24■□□□□ 0.83
Msx1P13297 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Msx1P13297 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Msx1P13297 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC20.24■□□□□ 0.83
Msx1P13297 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Msx1P13297 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC20.23■□□□□ 0.83
Msx1P13297 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
Msx1P13297 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC20.22■□□□□ 0.83
Msx1P13297 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Msx1P13297 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Msx1P13297 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Msx1P13297 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Msx1P13297 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Msx1P13297 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Msx1P13297 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Msx1P13297 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Msx1P13297 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Msx1P13297 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Msx1P13297 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Msx1P13297 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC20.21■□□□□ 0.83
Msx1P13297 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Msx1P13297 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Msx1P13297 Gm5131-201ENSMUST00000212776 1238 ntBASIC20.2■□□□□ 0.82
Msx1P13297 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Msx1P13297 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Msx1P13297 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Msx1P13297 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC20.19■□□□□ 0.82
Msx1P13297 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Msx1P13297 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Msx1P13297 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Msx1P13297 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Msx1P13297 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Msx1P13297 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Msx1P13297 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Msx1P13297 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Msx1P13297 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Msx1P13297 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Msx1P13297 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC20.18■□□□□ 0.82
Msx1P13297 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Msx1P13297 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC20.18■□□□□ 0.82
Msx1P13297 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Msx1P13297 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Msx1P13297 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Msx1P13297 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Msx1P13297 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC20.17■□□□□ 0.82
Msx1P13297 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Msx1P13297 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Msx1P13297 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Msx1P13297 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Msx1P13297 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Msx1P13297 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Msx1P13297 Serp2-204ENSMUST00000228055 705 ntBASIC20.16■□□□□ 0.82
Msx1P13297 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Msx1P13297 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Msx1P13297 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Msx1P13297 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Msx1P13297 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Msx1P13297 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Msx1P13297 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC20.15■□□□□ 0.82
Msx1P13297 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Msx1P13297 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC20.15■□□□□ 0.82
Msx1P13297 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Msx1P13297 AC117245.4-201ENSMUST00000217388 1646 ntBASIC20.15■□□□□ 0.82
Msx1P13297 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Msx1P13297 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Msx1P13297 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Msx1P13297 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Msx1P13297 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Msx1P13297 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Msx1P13297 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Msx1P13297 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Msx1P13297 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Msx1P13297 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC20.14■□□□□ 0.81
Msx1P13297 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC20.14■□□□□ 0.81
Msx1P13297 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC20.14■□□□□ 0.81
Msx1P13297 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
Msx1P13297 Gm13241-201ENSMUST00000094493 780 ntBASIC20.14■□□□□ 0.81
Msx1P13297 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Msx1P13297 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Msx1P13297 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Msx1P13297 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 70.6 ms