Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Lire1P11260 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Lire1P11260 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Lire1P11260 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
Lire1P11260 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Lire1P11260 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC19.98■□□□□ 0.79
Lire1P11260 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Lire1P11260 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Lire1P11260 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Lire1P11260 Gm4419-202ENSMUST00000226239 1431 ntBASIC19.98■□□□□ 0.79
Lire1P11260 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Lire1P11260 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Lire1P11260 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Lire1P11260 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
Lire1P11260 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC19.97■□□□□ 0.79
Lire1P11260 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Lire1P11260 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Lire1P11260 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Lire1P11260 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC19.97■□□□□ 0.79
Lire1P11260 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Lire1P11260 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Lire1P11260 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Lire1P11260 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC19.96■□□□□ 0.79
Lire1P11260 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Lire1P11260 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Lire1P11260 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Lire1P11260 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC19.95■□□□□ 0.78
Lire1P11260 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Lire1P11260 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC19.95■□□□□ 0.78
Lire1P11260 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
Lire1P11260 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Lire1P11260 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Lire1P11260 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC19.94■□□□□ 0.78
Lire1P11260 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Lire1P11260 Gm15546-201ENSMUST00000122095 826 ntBASIC19.94■□□□□ 0.78
Lire1P11260 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Lire1P11260 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Lire1P11260 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Lire1P11260 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Lire1P11260 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
Lire1P11260 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Lire1P11260 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC19.93■□□□□ 0.78
Lire1P11260 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Lire1P11260 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
Lire1P11260 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
Lire1P11260 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Lire1P11260 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Lire1P11260 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Lire1P11260 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Lire1P11260 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Lire1P11260 Gm22567-201ENSMUST00000175542 342 ntBASIC19.92■□□□□ 0.78
Lire1P11260 Gm44428-201ENSMUST00000204474 874 ntBASIC19.92■□□□□ 0.78
Lire1P11260 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Lire1P11260 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Lire1P11260 Gm43006-201ENSMUST00000197702 1602 ntBASIC19.91■□□□□ 0.78
Lire1P11260 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Lire1P11260 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Lire1P11260 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Lire1P11260 Gm15039-201ENSMUST00000118914 875 ntBASIC19.9■□□□□ 0.78
Lire1P11260 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Lire1P11260 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Lire1P11260 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC19.9■□□□□ 0.78
Lire1P11260 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Lire1P11260 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Lire1P11260 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Lire1P11260 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC19.89■□□□□ 0.77
Lire1P11260 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Lire1P11260 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Lire1P11260 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Lire1P11260 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Lire1P11260 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Lire1P11260 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Lire1P11260 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Lire1P11260 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC19.88■□□□□ 0.77
Lire1P11260 Iqck-206ENSMUST00000208658 2891 ntBASIC19.88■□□□□ 0.77
Lire1P11260 Gm43182-201ENSMUST00000199476 2528 ntBASIC19.87■□□□□ 0.77
Lire1P11260 Gm15043-201ENSMUST00000118843 1543 ntBASIC19.87■□□□□ 0.77
Lire1P11260 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Lire1P11260 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Lire1P11260 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Lire1P11260 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Lire1P11260 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
Lire1P11260 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Lire1P11260 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC19.86■□□□□ 0.77
Lire1P11260 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Lire1P11260 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Lire1P11260 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Lire1P11260 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Lire1P11260 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Lire1P11260 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Lire1P11260 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Lire1P11260 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Lire1P11260 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Lire1P11260 H3f3aos-201ENSMUST00000097448 2905 ntBASIC19.86■□□□□ 0.77
Lire1P11260 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Lire1P11260 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Lire1P11260 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC19.85■□□□□ 0.77
Lire1P11260 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Lire1P11260 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Lire1P11260 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms