Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Chmp6P0C0A3 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
Chmp6P0C0A3 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC23.23■■□□□ 1.31
Chmp6P0C0A3 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Chmp6P0C0A3 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Chmp6P0C0A3 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Chmp6P0C0A3 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Chmp6P0C0A3 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
Chmp6P0C0A3 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Chmp6P0C0A3 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
Chmp6P0C0A3 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
Chmp6P0C0A3 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Chmp6P0C0A3 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Chmp6P0C0A3 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
Chmp6P0C0A3 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Chmp6P0C0A3 AC117245.4-201ENSMUST00000217388 1646 ntBASIC23.21■■□□□ 1.31
Chmp6P0C0A3 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
Chmp6P0C0A3 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.31
Chmp6P0C0A3 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Chmp6P0C0A3 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC23.2■■□□□ 1.3
Chmp6P0C0A3 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC23.2■■□□□ 1.3
Chmp6P0C0A3 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
Chmp6P0C0A3 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
Chmp6P0C0A3 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC23.19■■□□□ 1.3
Chmp6P0C0A3 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Chmp6P0C0A3 Gm6277-202ENSMUST00000224036 2779 ntBASIC23.19■■□□□ 1.3
Chmp6P0C0A3 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
Chmp6P0C0A3 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Chmp6P0C0A3 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
Chmp6P0C0A3 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Chmp6P0C0A3 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Chmp6P0C0A3 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC23.18■■□□□ 1.3
Chmp6P0C0A3 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Chmp6P0C0A3 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
Chmp6P0C0A3 Gm5921-201ENSMUST00000075898 882 ntBASIC23.17■■□□□ 1.3
Chmp6P0C0A3 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Chmp6P0C0A3 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Chmp6P0C0A3 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Chmp6P0C0A3 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Chmp6P0C0A3 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC23.16■■□□□ 1.3
Chmp6P0C0A3 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
Chmp6P0C0A3 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Chmp6P0C0A3 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
Chmp6P0C0A3 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC23.16■■□□□ 1.3
Chmp6P0C0A3 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Chmp6P0C0A3 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC23.16■■□□□ 1.3
Chmp6P0C0A3 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
Chmp6P0C0A3 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Chmp6P0C0A3 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Chmp6P0C0A3 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Chmp6P0C0A3 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Chmp6P0C0A3 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Chmp6P0C0A3 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
Chmp6P0C0A3 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Chmp6P0C0A3 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC23.14■■□□□ 1.3
Chmp6P0C0A3 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC23.14■■□□□ 1.3
Chmp6P0C0A3 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC23.14■■□□□ 1.29
Chmp6P0C0A3 Nsd1-203ENSMUST00000224156 1149 ntBASIC23.14■■□□□ 1.29
Chmp6P0C0A3 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
Chmp6P0C0A3 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
Chmp6P0C0A3 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Chmp6P0C0A3 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Chmp6P0C0A3 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Chmp6P0C0A3 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
Chmp6P0C0A3 Gm13042-201ENSMUST00000119244 1955 ntBASIC23.13■■□□□ 1.29
Chmp6P0C0A3 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC23.13■■□□□ 1.29
Chmp6P0C0A3 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Chmp6P0C0A3 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC23.13■■□□□ 1.29
Chmp6P0C0A3 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
Chmp6P0C0A3 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Chmp6P0C0A3 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Chmp6P0C0A3 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC23.12■■□□□ 1.29
Chmp6P0C0A3 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Chmp6P0C0A3 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Chmp6P0C0A3 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Chmp6P0C0A3 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
Chmp6P0C0A3 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC23.11■■□□□ 1.29
Chmp6P0C0A3 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Chmp6P0C0A3 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
Chmp6P0C0A3 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
Chmp6P0C0A3 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Chmp6P0C0A3 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC23.1■■□□□ 1.29
Chmp6P0C0A3 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Chmp6P0C0A3 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
Chmp6P0C0A3 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Chmp6P0C0A3 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
Chmp6P0C0A3 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Chmp6P0C0A3 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Chmp6P0C0A3 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
Chmp6P0C0A3 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Chmp6P0C0A3 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
Chmp6P0C0A3 Dmtn-209ENSMUST00000228295 2572 ntBASIC23.09■■□□□ 1.29
Chmp6P0C0A3 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Chmp6P0C0A3 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Chmp6P0C0A3 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
Chmp6P0C0A3 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC23.09■■□□□ 1.29
Chmp6P0C0A3 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC23.09■■□□□ 1.29
Chmp6P0C0A3 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Chmp6P0C0A3 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Chmp6P0C0A3 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms