Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cops4O88544 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cops4O88544 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Cops4O88544 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cops4O88544 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Cops4O88544 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cops4O88544 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Cops4O88544 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Cops4O88544 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cops4O88544 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cops4O88544 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cops4O88544 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cops4O88544 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cops4O88544 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cops4O88544 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cops4O88544 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cops4O88544 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cops4O88544 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Cops4O88544 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cops4O88544 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cops4O88544 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cops4O88544 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cops4O88544 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC19.69■□□□□ 0.74
Cops4O88544 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Cops4O88544 Gm11599-201ENSMUST00000118720 878 ntBASIC19.69■□□□□ 0.74
Cops4O88544 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC19.69■□□□□ 0.74
Cops4O88544 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cops4O88544 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Cops4O88544 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cops4O88544 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Cops4O88544 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC19.68■□□□□ 0.74
Cops4O88544 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Cops4O88544 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cops4O88544 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cops4O88544 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cops4O88544 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cops4O88544 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cops4O88544 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cops4O88544 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cops4O88544 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Cops4O88544 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cops4O88544 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cops4O88544 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Cops4O88544 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Cops4O88544 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cops4O88544 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cops4O88544 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cops4O88544 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cops4O88544 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Cops4O88544 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Cops4O88544 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cops4O88544 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
Cops4O88544 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cops4O88544 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Cops4O88544 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cops4O88544 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cops4O88544 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cops4O88544 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cops4O88544 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Cops4O88544 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Cops4O88544 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cops4O88544 Mir3960-201ENSMUST00000198213 73 ntBASIC19.63■□□□□ 0.73
Cops4O88544 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
Cops4O88544 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
Cops4O88544 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Cops4O88544 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Cops4O88544 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC19.62■□□□□ 0.73
Cops4O88544 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cops4O88544 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cops4O88544 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cops4O88544 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cops4O88544 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cops4O88544 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Cops4O88544 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Cops4O88544 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Cops4O88544 AC154454.1-201ENSMUST00000225253 216 ntBASIC19.61■□□□□ 0.73
Cops4O88544 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Cops4O88544 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cops4O88544 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC19.61■□□□□ 0.73
Cops4O88544 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Cops4O88544 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cops4O88544 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC19.6■□□□□ 0.73
Cops4O88544 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Cops4O88544 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Cops4O88544 Gm42418-201ENSMUST00000182010 1831 ntBASIC19.6■□□□□ 0.73
Cops4O88544 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Cops4O88544 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cops4O88544 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cops4O88544 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cops4O88544 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC19.58■□□□□ 0.73
Cops4O88544 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Cops4O88544 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Cops4O88544 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Cops4O88544 Gm9812-201ENSMUST00000061934 968 ntBASIC19.58■□□□□ 0.72
Cops4O88544 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Cops4O88544 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Cops4O88544 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
Cops4O88544 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Cops4O88544 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Cops4O88544 AC122317.2-201ENSMUST00000218708 1248 ntBASIC19.57■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 14.7 ms