Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Col5a1O88207 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col5a1O88207 Gm28731-201ENSMUST00000185564 1569 ntBASIC19.8■□□□□ 0.76
Col5a1O88207 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC19.8■□□□□ 0.76
Col5a1O88207 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col5a1O88207 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC19.8■□□□□ 0.76
Col5a1O88207 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Col5a1O88207 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col5a1O88207 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col5a1O88207 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col5a1O88207 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Col5a1O88207 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Col5a1O88207 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC19.79■□□□□ 0.76
Col5a1O88207 Gm8495-201ENSMUST00000188740 694 ntBASIC19.79■□□□□ 0.76
Col5a1O88207 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col5a1O88207 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC19.79■□□□□ 0.76
Col5a1O88207 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC19.79■□□□□ 0.76
Col5a1O88207 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col5a1O88207 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col5a1O88207 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC19.78■□□□□ 0.76
Col5a1O88207 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col5a1O88207 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col5a1O88207 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col5a1O88207 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC19.78■□□□□ 0.76
Col5a1O88207 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col5a1O88207 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
Col5a1O88207 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC19.77■□□□□ 0.76
Col5a1O88207 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC19.77■□□□□ 0.75
Col5a1O88207 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Col5a1O88207 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col5a1O88207 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC19.76■□□□□ 0.75
Col5a1O88207 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col5a1O88207 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC19.76■□□□□ 0.75
Col5a1O88207 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col5a1O88207 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC19.76■□□□□ 0.75
Col5a1O88207 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col5a1O88207 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Col5a1O88207 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Col5a1O88207 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC19.75■□□□□ 0.75
Col5a1O88207 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col5a1O88207 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC19.75■□□□□ 0.75
Col5a1O88207 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Col5a1O88207 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Col5a1O88207 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Col5a1O88207 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col5a1O88207 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col5a1O88207 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col5a1O88207 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC19.74■□□□□ 0.75
Col5a1O88207 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col5a1O88207 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Col5a1O88207 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col5a1O88207 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Col5a1O88207 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col5a1O88207 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Col5a1O88207 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col5a1O88207 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Col5a1O88207 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Col5a1O88207 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col5a1O88207 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Col5a1O88207 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC19.73■□□□□ 0.75
Col5a1O88207 Gm11847-201ENSMUST00000125165 1119 ntBASIC19.73■□□□□ 0.75
Col5a1O88207 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC19.73■□□□□ 0.75
Col5a1O88207 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Col5a1O88207 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
Col5a1O88207 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC19.73■□□□□ 0.75
Col5a1O88207 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col5a1O88207 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col5a1O88207 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col5a1O88207 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Col5a1O88207 Gm40881-201ENSMUST00000223397 166 ntBASIC19.72■□□□□ 0.75
Col5a1O88207 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col5a1O88207 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col5a1O88207 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col5a1O88207 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col5a1O88207 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col5a1O88207 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC19.71■□□□□ 0.75
Col5a1O88207 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col5a1O88207 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC19.71■□□□□ 0.75
Col5a1O88207 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col5a1O88207 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Col5a1O88207 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC19.7■□□□□ 0.74
Col5a1O88207 Gm10399-202ENSMUST00000202768 748 ntBASIC19.7■□□□□ 0.74
Col5a1O88207 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col5a1O88207 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC19.69■□□□□ 0.74
Col5a1O88207 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
Col5a1O88207 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col5a1O88207 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Col5a1O88207 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col5a1O88207 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col5a1O88207 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col5a1O88207 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC19.69■□□□□ 0.74
Col5a1O88207 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Col5a1O88207 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Col5a1O88207 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC19.69■□□□□ 0.74
Col5a1O88207 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
Col5a1O88207 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC19.69■□□□□ 0.74
Col5a1O88207 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col5a1O88207 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col5a1O88207 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col5a1O88207 AC164629.5-201ENSMUST00000220387 632 ntBASIC19.68■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 14.8 ms