Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Pcdhgb8A0A140LI48 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Pcdhgb8A0A140LI48 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Pcdhgb8A0A140LI48 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Pcdhgb8A0A140LI48 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Pcdhgb8A0A140LI48 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Pcdhgb8A0A140LI48 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Pcdhgb8A0A140LI48 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Pcdhgb8A0A140LI48 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Pcdhgb8A0A140LI48 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Pcdhgb8A0A140LI48 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Pcdhgb8A0A140LI48 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Pcdhgb8A0A140LI48 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC19.22■□□□□ 0.67
Pcdhgb8A0A140LI48 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Pcdhgb8A0A140LI48 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Pcdhgb8A0A140LI48 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdhgb8A0A140LI48 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdhgb8A0A140LI48 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Pcdhgb8A0A140LI48 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdhgb8A0A140LI48 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.66
Pcdhgb8A0A140LI48 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdhgb8A0A140LI48 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdhgb8A0A140LI48 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdhgb8A0A140LI48 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Pcdhgb8A0A140LI48 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdhgb8A0A140LI48 Gm27502-201ENSMUST00000183495 199 ntBASIC19.2■□□□□ 0.66
Pcdhgb8A0A140LI48 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Pcdhgb8A0A140LI48 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdhgb8A0A140LI48 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdhgb8A0A140LI48 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdhgb8A0A140LI48 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdhgb8A0A140LI48 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdhgb8A0A140LI48 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Pcdhgb8A0A140LI48 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC19.18■□□□□ 0.66
Pcdhgb8A0A140LI48 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
Pcdhgb8A0A140LI48 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC19.18■□□□□ 0.66
Pcdhgb8A0A140LI48 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhgb8A0A140LI48 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Pcdhgb8A0A140LI48 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
Pcdhgb8A0A140LI48 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhgb8A0A140LI48 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Pcdhgb8A0A140LI48 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Pcdhgb8A0A140LI48 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhgb8A0A140LI48 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhgb8A0A140LI48 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhgb8A0A140LI48 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhgb8A0A140LI48 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhgb8A0A140LI48 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC19.17■□□□□ 0.66
Pcdhgb8A0A140LI48 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdhgb8A0A140LI48 Hsf1-207ENSMUST00000228371 2102 ntBASIC19.17■□□□□ 0.66
Pcdhgb8A0A140LI48 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdhgb8A0A140LI48 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdhgb8A0A140LI48 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdhgb8A0A140LI48 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdhgb8A0A140LI48 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Pcdhgb8A0A140LI48 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC19.16■□□□□ 0.66
Pcdhgb8A0A140LI48 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdhgb8A0A140LI48 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Pcdhgb8A0A140LI48 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdhgb8A0A140LI48 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdhgb8A0A140LI48 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Pcdhgb8A0A140LI48 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Pcdhgb8A0A140LI48 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC19.15■□□□□ 0.66
Pcdhgb8A0A140LI48 Gm44428-201ENSMUST00000204474 874 ntBASIC19.15■□□□□ 0.66
Pcdhgb8A0A140LI48 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC19.15■□□□□ 0.66
Pcdhgb8A0A140LI48 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Pcdhgb8A0A140LI48 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Pcdhgb8A0A140LI48 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Pcdhgb8A0A140LI48 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Pcdhgb8A0A140LI48 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Pcdhgb8A0A140LI48 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Pcdhgb8A0A140LI48 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC19.14■□□□□ 0.66
Pcdhgb8A0A140LI48 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Pcdhgb8A0A140LI48 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Pcdhgb8A0A140LI48 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Pcdhgb8A0A140LI48 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC19.14■□□□□ 0.65
Pcdhgb8A0A140LI48 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Pcdhgb8A0A140LI48 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Pcdhgb8A0A140LI48 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Pcdhgb8A0A140LI48 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Pcdhgb8A0A140LI48 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Pcdhgb8A0A140LI48 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC19.13■□□□□ 0.65
Pcdhgb8A0A140LI48 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Pcdhgb8A0A140LI48 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Pcdhgb8A0A140LI48 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Pcdhgb8A0A140LI48 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC19.12■□□□□ 0.65
Pcdhgb8A0A140LI48 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Pcdhgb8A0A140LI48 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Pcdhgb8A0A140LI48 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Pcdhgb8A0A140LI48 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Pcdhgb8A0A140LI48 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Pcdhgb8A0A140LI48 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Pcdhgb8A0A140LI48 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
Pcdhgb8A0A140LI48 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Pcdhgb8A0A140LI48 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Pcdhgb8A0A140LI48 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Pcdhgb8A0A140LI48 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Pcdhgb8A0A140LI48 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Pcdhgb8A0A140LI48 AC151971.4-201ENSMUST00000214717 704 ntBASIC19.1■□□□□ 0.65
Pcdhgb8A0A140LI48 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC19.1■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 51.1 ms