Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Nfic-203ENSMUST00000105321 6237 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Smco4Q9JIS3 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC10.75□□□□□ -0.69
Smco4Q9JIS3 Ppip5k1-202ENSMUST00000110625 5226 ntAPPRIS ALT2 TSL 5 BASIC10.75□□□□□ -0.69
Smco4Q9JIS3 Tmem200a-203ENSMUST00000218232 3510 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Smco4Q9JIS3 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Smco4Q9JIS3 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Smco4Q9JIS3 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC10.75□□□□□ -0.69
Smco4Q9JIS3 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Smco4Q9JIS3 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC10.75□□□□□ -0.69
Smco4Q9JIS3 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Prc1-206ENSMUST00000173824 2912 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Ambra1-203ENSMUST00000099712 5021 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Gm27177-202ENSMUST00000183514 2703 ntBASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Slc9a1-201ENSMUST00000030669 4676 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Gm43075-201ENSMUST00000198613 3905 ntBASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Gm4782-201ENSMUST00000168705 2046 ntBASIC10.74□□□□□ -0.69
Smco4Q9JIS3 AC122291.1-201ENSMUST00000228937 5748 ntBASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Slurp1-202ENSMUST00000190433 2859 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Gm37055-201ENSMUST00000191866 133 ntBASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Gm43799-201ENSMUST00000201845 579 ntBASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Gm9182-201ENSMUST00000217829 639 ntBASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Hexim1-201ENSMUST00000053063 3495 ntAPPRIS P1 BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Mab21l3-202ENSMUST00000118411 2700 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Gm28036-202ENSMUST00000132494 5505 ntAPPRIS P5 TSL 2 BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 3830432H09Rik-202ENSMUST00000188909 2414 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Fhdc1-202ENSMUST00000107689 5918 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Ccdc114-201ENSMUST00000038720 2460 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC10.74□□□□□ -0.69
Smco4Q9JIS3 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Rcor3-201ENSMUST00000073279 3748 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Gdpd2-201ENSMUST00000019503 2495 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Zfp862-ps-201ENSMUST00000203457 3282 ntBASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Col6a6-202ENSMUST00000098441 8781 ntAPPRIS P2 TSL 5 BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 AC164441.2-201ENSMUST00000220818 2746 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Tmod2-201ENSMUST00000064433 9884 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Mki67-201ENSMUST00000033310 10061 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Gm37391-201ENSMUST00000194891 2318 ntBASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Gm45751-201ENSMUST00000210185 1573 ntBASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Smco4Q9JIS3 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms