Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ddx56Q9D0R4 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ddx56Q9D0R4 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ddx56Q9D0R4 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ddx56Q9D0R4 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Gm15678-201ENSMUST00000117573 960 ntBASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Ldha-ps-201ENSMUST00000119390 995 ntBASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Mir6977-201ENSMUST00000184960 64 ntBASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Gm38144-201ENSMUST00000192790 465 ntBASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx56Q9D0R4 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.15
Ddx56Q9D0R4 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Ddx56Q9D0R4 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Ddx56Q9D0R4 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 AC154527.2-201ENSMUST00000225256 1466 ntBASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Gm37795-201ENSMUST00000194216 2459 ntBASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Gm27437-201ENSMUST00000183429 107 ntBASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Gm18041-201ENSMUST00000218210 618 ntBASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 AC192088.1-201ENSMUST00000227561 301 ntBASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Gm43273-201ENSMUST00000199649 2594 ntBASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Ddx56Q9D0R4 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms