Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ddx28Q9CWT6 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ddx28Q9CWT6 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ddx28Q9CWT6 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Ddx28Q9CWT6 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC12.65□□□□□ -0.38
Ddx28Q9CWT6 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ddx28Q9CWT6 B3gat2-201ENSMUST00000063663 5655 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ddx28Q9CWT6 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ddx28Q9CWT6 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ddx28Q9CWT6 Grhl2-201ENSMUST00000022895 4947 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ddx28Q9CWT6 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Ddx28Q9CWT6 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Ddx28Q9CWT6 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.39
Ddx28Q9CWT6 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.39
Ddx28Q9CWT6 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Gm9347-201ENSMUST00000211473 1607 ntBASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Gm15920-201ENSMUST00000118998 402 ntBASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Gm27430-201ENSMUST00000184585 107 ntBASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Gm28630-201ENSMUST00000187806 498 ntBASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Gm44333-201ENSMUST00000197168 107 ntBASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Gm5779-201ENSMUST00000218467 910 ntBASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Gm16476-201ENSMUST00000221544 139 ntBASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Dupd1-202ENSMUST00000224735 548 ntBASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 AC090659.2-201ENSMUST00000225378 1186 ntBASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 AC155298.2-201ENSMUST00000225485 6226 ntBASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Zeb2-212ENSMUST00000176438 9124 ntAPPRIS P2 TSL 5 BASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC12.64□□□□□ -0.39
Ddx28Q9CWT6 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Gm7336-201ENSMUST00000107041 1232 ntBASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Gm12428-201ENSMUST00000119844 727 ntBASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Gm13616-201ENSMUST00000120600 222 ntBASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Gm25925-201ENSMUST00000158314 306 ntBASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 AC124732.2-201ENSMUST00000221977 316 ntBASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Tmem181a-201ENSMUST00000088940 4405 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Gpa33-202ENSMUST00000060833 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Ddx28Q9CWT6 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Ddx28Q9CWT6 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms