Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Sf3b1Q99NB9 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sf3b1Q99NB9 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Gm3695-201ENSMUST00000087222 1009 ntBASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Gm42872-201ENSMUST00000200026 1967 ntBASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sf3b1Q99NB9 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Gm4271-201ENSMUST00000174444 973 ntBASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Gm15544-201ENSMUST00000118776 1531 ntBASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sf3b1Q99NB9 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Gm12626-201ENSMUST00000117339 1983 ntBASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Gm12623-201ENSMUST00000119849 1983 ntBASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Gm27514-201ENSMUST00000183692 110 ntBASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Gm42929-201ENSMUST00000198374 1286 ntBASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Gm16372-201ENSMUST00000073088 450 ntBASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Gm10040-201ENSMUST00000080726 1662 ntBASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sf3b1Q99NB9 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms